ZFIN ID: ZDB-LAB-140328-1
Gene Regulation Research Lab
PI/Director: Bessho, Yasumasa
Contact Person: Matsui, Takaaki
Email: +81-743-72-5479
URL: http://+81-743-72-5479
Address: Department of Biological Sciences Nara Institute of Science and Technology 8916-5 Takayama Ikoma Nara 630-0101 Japan Phone: +81-743-72-5472 Fax: +81-743-72-5479
Country: Japan
Phone: +81-743-72-5472
Fax: +81-743-72-5479
Line Designation: ni

Show all 4 genomic features


Ishikawa, Hiroshi Graduate Student Matsui, Takaaki Graduate Student Sari, Dini Graduate Student
Tahara, Naoyuki Graduate Student Tsuge, Shoichiro Graduate Student Wong, Kah Loon Graduate Student
Yamada, Sohei Graduate Student

Tahara, N., Akiyama, R., Wang, J., Kawakami, H., Bessho, Y., Kawakami, Y. (2021) The FGF-AKT pathway is necessary for cardiomyocyte survival for heart regeneration in zebrafish. Developmental Biology. 472:30-37
Karaiwa, A., Yamada, S., Yamamoto, H., Wakasa, M., Ishijima, H., Akiyama, R., Hosokawa, Y., Bessho, Y., Matsui, T. (2020) Relationship between surrounding tissue morphology and directional collective migration of the posterior lateral line primordium in zebrafish. Genes to cells : devoted to molecular & cellular mechanisms. 25(8):582-592
Naoki, H., Matsui, T. (2020) Somite boundary determination in normal and clock-less vertebrate embryos. Development, growth & differentiation. 62(3):177-187
Takeuchi, Y., Narumi, R., Akiyama, R., Vitiello, E., Shirai, T., Tanimura, N., Kuromiya, K., Ishikawa, S., Kajita, M., Tada, M., Haraoka, Y., Akieda, Y., Ishitani, T., Fujioka, Y., Ohba, Y., Yamada, S., Hosokawa, Y., Toyama, Y., Matsui, T., Fujita, Y. (2020) Calcium Wave Promotes Cell Extrusion. Current biology : CB. 30(4):670-681.e6
Morikawa, M., Mitani, Y., Holmborn, K., Kato, T., Koinuma, D., Maruyama, J., Vasilaki, E., Sawada, H., Kobayashi, M., Ozawa, T., Morishita, Y., Bessho, Y., Maeda, S., Ledin, J., Aburatani, H., Kageyama, R., Maruyama, K., Heldin, C.H., Miyazono, K. (2019) The ALK-1/SMAD/ATOH8 axis attenuates hypoxic responses and protects against the development of pulmonary arterial hypertension. Science signaling. 12(607)
Ashikawa, Y., Shiromizu, T., Miura, K., Adachi, Y., Matsui, T., Bessho, Y., Tanaka, T., Nishimura, Y. (2019) C3orf70 Is Involved in Neural and Neurobehavioral Development. Pharmaceuticals (Basel, Switzerland). 12(4):
Urasaki, A., Morishita, S., Naka, K., Uozumi, M., Abe, K., Huang, L., Watase, E., Nakagawa, O., Kawakami, K., Matsui, T., Bessho, Y., Inagaki, N. (2019) Shootins mediate collective cell migration and organogenesis of the zebrafish posterior lateral line system. Scientific Reports. 9:12156
Abe, K., Shimada, A., Tayama, S., Nishikawa, H., Kaneko, T., Tsuda, S., Karaiwa, A., Matsui, T., Ishitani, T., Takeda, H. (2019) Horizontal Boundary Cells, a Special Group of Somitic Cells, Play Crucial Roles in the Formation of Dorsoventral Compartments in Teleost Somite. Cell Reports. 27:928-939.e4
Naoki, H., Akiyama, R., Sari, D.W.K., Ishii, S., Bessho, Y., Matsui, T. (2019) Noise-resistant developmental reproducibility in vertebrate somite formation. PLoS Computational Biology. 15:e1006579
Wong, K.L., Akiyama, R., Bessho, Y., Matsui, T. (2018) ERK Activity Dynamics during Zebrafish Embryonic Development. International Journal of Molecular Sciences. 20(1)
Ishimatsu, K., Hiscock, T.W., Collins, Z.M., Sari, D.W.K., Lischer, K., Richmond, D.L., Bessho, Y., Matsui, T., Megason, S.G. (2018) Size-reduced embryos reveal a gradient scaling based mechanism for zebrafish somite formation. Development (Cambridge, England). 145(11)
Sari, D.W.K., Akiyama, R., Naoki, H., Ishijima, H., Bessho, Y., Matsui, T. (2018) Time-lapse observation of stepwise regression of Erk activity in zebrafish presomitic mesoderm. Scientific Reports. 8:4335
Yamada, S., Iino, T., Bessho, Y., Hosokawa, Y., Matsui, T. (2017) Quantitative analysis of mechanical force required for cell extrusion in zebrafish embryonic epithelia. Biology Open. 6(10):1575-1580
Matsui, T., Bessho, Y. (2017) Analyzing ERK Signal Dynamics During Zebrafish Somitogenesis. Methods in molecular biology (Clifton, N.J.). 1487:367-378
Baik, J., Magli, A., Tahara, N., Swanson, S.A., Koyano-Nakagawa, N., Borges, L., Stewart, R., Garry, D.J., Kawakami, Y., Thomson, J.A., Perlingeiro, R.C. (2016) Endoglin integrates BMP and Wnt signalling to induce haematopoiesis through JDP2. Nature communications. 7:13101
Tahara, N., Brush, M., Kawakami, Y. (2016) Cell migration during heart regeneration in zebrafish. Developmental dynamics : an official publication of the American Association of Anatomists. 245(7):774-87
Matsui, T., Ishikawa, H., Bessho, Y. (2015) Cell collectivity regulation within migrating cell cluster during Kupffer's vesicle formation in zebrafish. Frontiers in cell and developmental biology. 3:27
Akiyama, R., Masuda, M., Tsuge, S., Bessho, Y., and Matsui, T. (2014) An anterior limit of FGF/Erk signal activity marks the earliest future somite boundary in zebrafish. Development (Cambridge, England). 141(5):1104-1109
Retnoaji, B., Akiyama, R., Matta, T., Bessho, Y., and Matsui, T. (2014) Retinoic acid controls proper head-to-trunk linkage in zebrafish by regulating an anteroposterior somitogenetic rate difference. Development (Cambridge, England). 141(1):158-165
Tahara, N., Bessho, Y., and Matsui, T. (2013) Celf1 is required for formation of endoderm-derived organs in zebrafish. International Journal of Molecular Sciences. 14(9):18009-18023
Schuman, J.S., Kagemann, L., Ishikawa, H., and Wollstein, G. (2012) Spectral-domain optical coherence tomography as a noninvasive method to assess damaged and regenerating adult zebrafish retinas. Investigative ophthalmology & visual science. 53(11):7315
Matsui, T., Sasaki, A., Akazawa, N., Otani, H., and Bessho, Y. (2012) Celf1 regulation of dmrt2a is required for somite symmetry and left-right patterning during zebrafish development. Development (Cambridge, England). 139(19):3553-3560
Matsui, T., and Bessho, Y. (2012) Left-right asymmetry in zebrafish. Cellular and molecular life sciences : CMLS. 69(18):3069-3077
Matsui, T., Thitamadee, S., Murata, T., Kakinuma, H., Nabetani, T., Hirabayashi, Y., Hirate, Y., Okamoto, H., and Bessho, Y. (2011) Canopy1, a positive feedback regulator of FGF signaling, controls progenitor cell clustering during Kupffer's vesicle organogenesis. Proceedings of the National Academy of Sciences of the United States of America. 108(24):9881-6
Matsui, T., Raya, A., Callol-Massot, C., Kawakami, Y., Oishi, I., Rodriguez-Esteban, C., and Izpisúa Belmonte, J.C. (2007) miles-apart-Mediated regulation of cell-fibronectin interaction and myocardial migration in zebrafish. Nature clinical practice. Cardiovascular medicine. 4(1):S77-S82
Weninger, W.J., Geyer, S.H., Mohun, T.J., Rasskin-Gutman, D., Matsui, T., Ribeiro, I., Costa, L.D., Izpisúa Belmonte, J.C., and Muller, G.B. (2006) High-resolution episcopic microscopy: a rapid technique for high detailed 3D analysis of gene activity in the context of tissue architecture and morphology. Anatomy and embryology. 211(3):213-221
Correa, R.G., Matsui, T., Tergaonkar, V., Rodriguez-Esteban, C., Izpisúa Belmonte, J.C., and Verma, I.M. (2005) Zebrafish IkappaB Kinase 1 Negatively Regulates NF-kappaB Activity. Current biology : CB. 15(14):1291-1295
Matsui, T., Raya, A., Kawakami, Y., Callol-Massot, C., Capdevila, J., Rodriguez-Esteban, C., Izpisúa Belmonte, J.C. (2005) Noncanonical Wnt signaling regulates midline convergence of organ primordia during zebrafish development. Genes & Development. 19(1):164-175
Kawakami, Y., Esteban, C.R., Matsui, T., Rodriguez-Leon, J., Kato, S., and Izpisúa Belmonte, J.C. (2004) Sp8 and Sp9, two closely related buttonhead-like transcription factors, regulate Fgf8 expression and limb outgrowth in vertebrate embryos. Development (Cambridge, England). 131(19):4763-4774