ZFIN ID: ZDB-LAB-001206-5
Sampath Lab
PI/Director: Sampath, Karuna
Contact Person: Sampath, Karuna
Email: K.Sampath@warwick.ac.uk
URL: http://www2.warwick.ac.uk/fac/med/research/biomedical/sampathlab
Address: Division of Biomedical Sciences Warwick Medical School The University of Warwick Coventry, CV4 7AJ United Kingdom
Country: United Kingdom
Phone: + 44 0 24 76573526
Line Designation: ws

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Maternal Control of Embryonic Development, RNA Localization, Translational control, Functional RNAs in the Genome; Maternal Nodal, Regulation of Nodal Signalling

Zaucker, Andreas Post-Doc Clarke, Scott Graduate Student Lambert, Finnlay Graduate Student
Vong, Leo Graduate Student Nagorska, Agnieszka Research Staff Bagley, Ian Fish Facility Staff

Pinto, C.S., Mishima, M., Sampath, K. (2020) Tools of the trade: studying actin in zebrafish. Histochemistry and cell biology. 154(5):481-493
Syed, J., Palani, S., Clarke, S.T., Asad, Z., Bottrill, A.R., Jones, A.M.E., Sampath, K., Balasubramanian, M.K. (2019) Expanding the Zebrafish Genetic Code through Site-Specific Introduction of Azido-lysine, Bicyclononyne-lysine, and Diazirine-lysine. International Journal of Molecular Sciences. 20(10):
Zaucker, A., Kumari, P., Sampath, K. (2019) Zebrafish embryogenesis - A framework to study regulatory RNA elements in development and disease. Developmental Biology. 457(2):172-180
Yi, X., Yu, J., Ma, C., Dong, G., Shi, W., Li, H., Li, L., Luo, L., Sampath, K., Ruan, H., Huang, H. (2019) The effector of Hippo signaling, Taz, is required for formation of the micropyle and fertilization in zebrafish. PLoS Genetics. 15:e1007408
Coverdale, J.P.C., Bridgewater, H.E., Song, J.I., Smith, N.A., Barry, N.P.E., Bagley, I., Sadler, P.J., Romero Canelon, I. (2018) In vivo selectivity and localization of reactive oxygen species (ROS) induction by osmium anticancer complexes that circumvent platinum-resistance. Journal of medicinal chemistry. 61(20):9246-9255
Ng, X.W., Sampath, K., Wohland, T. (2018) Fluorescence Correlation and Cross-Correlation Spectroscopy in Zebrafish. Methods in molecular biology (Clifton, N.J.). 1863:67-105
Winata, C.L., Łapiński, M., Pryszcz, L., Vaz, C., Bin Ismail, M.H., Nama, S., Hajan, H.S., Lee, S.G.P., Korzh, V., Sampath, P., Tanavde, V., Mathavan, S. (2017) Cytoplasmic polyadenylation-mediated translational control of maternal mRNAs directs maternal to zygotic transition. Development (Cambridge, England). 145(1)
Zaucker, A., Nagorska, A., Kumari, P., Hecker, N., Wang, Y., Huang, S., Cooper, L., Sivashanmugam, L., VijayKumar, S., Brosens, J., Gorodkin, J., Sampath, K. (2017) Translational co-regulation of a ligand and inhibitor by a conserved RNA element. Nucleic acids research. 46(1):104-119
Quach, H.N., Tao, S., Vrljicak, P., Joshi, A., Ruan, H., Sukumaran, R., Varshney, G.K., LaFave, M.C., Screen Team, T.D., Burgess, S.M., Winkler, C., Emelyanov, A., Parinov, S., Sampath, K. (2017) Expression Data for a Multifunctional Mutagenesis System for Analysis of Gene Function in Zebrafish. ZFIN Direct Data Submission.
Wang, Y., Wang, X., Wohland, T., Sampath, K. (2016) Extracellular interactions and ligand degradation shape the nodal morphogen gradient. eLIFE. 5:e13879
Vrljicak, P., Tao, S., Varshney, G.K., Quach, H.N., Joshi, A., LaFave, M.C., Burgess, S.M., Sampath, K. (2016) Genome-Wide Analysis of Transposon and Retroviral Insertions Reveals Preferential Integrations in Regions of DNA Flexibility. G3 (Bethesda). 6(4):805-17
Quach, H.N., Tao, S., Vrljicak, P., Joshi, A., Ruan, H., Sukumaran, R., Varshney, G.K., LaFave, M.C., Screen Team, T.D., Burgess, S.M., Winkler, C., Emelyanov, A., Parinov, S., Sampath, K. (2015) A Multifunctional Mutagenesis System for Analysis of Gene Function in Zebrafish. G3 (Bethesda). 5(6):1283-99
Young, T., Poobalan, Y., Tan, E.K., Tao, S., Ong, S., Wehner, P., Schwenty-Lara, J., Lim, C.Y., Sadasivam, A., Lovatt, M., Wang, S.T., Ali, Y., Borchers, A., Sampath, K., Dunn, N.R. (2014) The PDZ domain protein Mcc is a novel effector of non-canonical Wnt signaling during convergence and extension in zebrafish. Development (Cambridge, England). 141:3505-16
Kumari, P., Gilligan, P.C., Lim, S., Tran, L.D., Winkler, S., Philp, R., and Sampath, K. (2013) An essential role for maternal control of Nodal signaling. eLIFE. 2:e00683
Lim, S., Wang, Y., Yu, X., Huang, Y., Featherstone, M.S., and Sampath, K. (2013) A simple strategy for heritable chromosomal deletions in zebrafish via the combinatorial action of targeting nucleases. Genome biology. 14(7):R69
Tran, L.D., Hino, H., Quach, H., Lim, S., Shindo, A., Mimori-Kiyosue, Y., Mione, M., Ueno, N., Winkler, C., Hibi, M., and Sampath, K. (2012) Dynamic microtubules at the vegetal cortex predict the embryonic axis in zebrafish. Development (Cambridge, England). 139(19):3644-3652
Lim, S., Kumari, P., Gilligan, P., Quach, H.N., Mathavan, S., and Sampath, K. (2012) Dorsal activity of maternal squint is mediated by a non-coding function of the RNA. Development (Cambridge, England). 139(16):2903-2915
Gilligan, P.C., Kumari, P., Lim, S., Cheong, A., Chang, A., and Sampath, K. (2011) Conservation defines functional motifs in the squint/nodal-related 1 RNA dorsal localization element. Nucleic acids research. 39(8):3340-9
Tao, S., Cai, Y., and Sampath, K. (2009) The Integrator subunits function in hematopoiesis by modulating Smad/BMP signaling. Development (Cambridge, England). 136(16):2757-2765
Tian, J., Andrée, B., Jones, C.M., and Sampath, K. (2008) The pro-domain of the zebrafish Nodal-related protein Cyclops regulates its signaling activities. Development (Cambridge, England). 135(15):2649-2658
Gore, A.V., Cheong, A., Gilligan, P.C., and Sampath, K. (2007) Gore et al. reply. Nature. 450(7167):E2-E4
Ramasamy, S., Wang, H., Quach, H.N., and Sampath, K. (2006) Zebrafish Staufen1 and Staufen2 are required for the survival and migration of primordial germ cells. Developmental Biology. 292(2):393-406
Gore, A.V., Maegawa, S., Cheong, A., Gilligan, P.C., Weinberg, E.S., and Sampath, K. (2005) The zebrafish dorsal axis is apparent at the four-cell stage. Nature. 438(7070):1030-1035
Tian, J., and Sampath, K. (2004) Formation and Functions of the Floor Plate. In Fish Development and Genetics - the Zebrafish and Medaka Models. Gong, Z. and Korh, V., Eds. Book series of "Molecular Aspects of Fish and Marine Biology". 239(9)
Tian, J., Yam, C., Balasundaram, G., Wang, H., Gore, A., and Sampath, K. (2003) A temperature-sensitive mutation in the nodal-related gene cyclops reveals that the floor plate is induced during gastrulation in zebrafish. Development (Cambridge, England). 130(14):3331-3342
Gore, A.V., and Sampath, K. (2002) Localization of transcripts of the zebrafish morphogen Squint is dependent on egg activation and the microtubule cytoskeleton. Mechanisms of Development. 112(1-2):153-156
Sampath, K., Rubinstein, A.L., Cheng, A.H.S., Liang, J.O., Fekany, K., Solnica-Krezel, L., Korzh, V., Halpern, M.E., and Wright, C.V.E. (1998) Induction of the zebrafish ventral brain and floorplate requires cyclops/nodal signalling. Nature. 395:185-189
Sampath, K. and Stuart, G.W. (1996) Developmental expression of class III and IV POU domain genes in the zebrafish. Biochemical and Biophysical Research Communications. 219:565-571
Sampath, K. (1995) Expression of POU domain genes in zebrafish development. Ph.D. Thesis.