ZFIN is now using GRCz12tu for Genomic Data

Gene

gramd1bb

ID

ZDB-GENE-140106-106

Name

GRAM domain containing 1Bb

Symbol

gramd1bb Nomenclature History

Previous Names

zmp:0000001146 (1)

Type

protein_coding_gene

Location

Chr: 18 Mapping Details/Browsers

Genome Assembly

GRCz12tu

Annotation Status

Current

Description

Predicted to be located in endoplasmic reticulum membrane and organelle membrane contact site. Is expressed in hindbrain and otic vesicle. Orthologous to human GRAMD1B (GRAM domain containing 1B).

Genome Resources

Note

None

Comparative Information

Expression

All Expression Data

1 figure from Wuttke et al., 2016

Cross-Species Comparison

High Throughput Data

Expression Atlas

UO scRNA-seq (UCSC browser)

Single Cell Expression Atlas

Daniocell

Thisse Expression Data

No data available

Wild Type Expression Summary

Phenotype

All Phenotype Data: 1 Figure from Thyme et al., 2019
Cross-Species Comparison: Alliance

Phenotype Summary

Mutations

Mutants

Sequence Targeting Reagents

Human Disease

Associated With gramd1bb Human Ortholog

No data available

Associated With gramd1bb Via Experimental Models

No data available

Gene Ontology

Protein Domains

Domain, Family, and Site Summary

Type	InterPro ID	Name
Domain	IPR004182	GRAM domain
Domain	IPR031968	VASt domain
Family	IPR051482	Cholesterol transport domain-containing protein
Homologous_superfamily	IPR011993	PH-like domain superfamily

Domain Details Per Protein

Protein	Additional Resources	Length
UniProtKB:E7F9Y2	InterPro	748
UniProtKB:A0A8M9PMT0	InterPro	951
UniProtKB:A0A8M9PAM7	InterPro	936
UniProtKB:A0A8M9PMT5	InterPro	943
UniProtKB:A0A8M9PMT9	InterPro	923
UniProtKB:A0A8M9P1J5	InterPro	940
UniProtKB:A0A8M9PR30	InterPro	946
UniProtKB:A0A8M9PR35	InterPro	778
UniProtKB:A0A8M6Z2U8	InterPro	917
UniProtKB:A0A8M6YUD5	InterPro	928
UniProtKB:A0A8M9PG23	InterPro	782
UniProtKB:A0A8M6YTS1	InterPro	728
UniProtKB:A0A8M9PG20	InterPro	947
UniProtKB:A0A8M9P1K0	InterPro	916
UniProtKB:A0A8M6YW88	InterPro	924
UniProtKB:A0A8M6Z276	InterPro	935
UniProtKB:A0A8M9PAM4	InterPro	950
UniProtKB:A0A8M6YTR6	InterPro	943
UniProtKB:A0A8M9PAN1	InterPro	912
UniProtKB:A0AC58HUW7	InterPro	924
UniProtKB:A0AC58HUX1	InterPro	811
UniProtKB:A0AC58HUX2	InterPro	766
UniProtKB:A0AC58HUX3	InterPro	909
UniProtKB:A0AC58HUX4	InterPro	913
UniProtKB:A0AC58HUX5	InterPro	755
UniProtKB:A0AC58HUX6	InterPro	924
UniProtKB:A0AC58HUX7	InterPro	759
UniProtKB:A0AC58HUY0	InterPro	827
UniProtKB:A0AC58HUY1	InterPro	909
UniProtKB:A0AC58HUY4	InterPro	719
UniProtKB:A0AC58HUY5	InterPro	751
UniProtKB:A0AC58HUY6	InterPro	909
UniProtKB:A0AC58HUY7	InterPro	751
UniProtKB:A0AC58HUY8	InterPro	751
UniProtKB:A0AC58HUY9	InterPro	747
UniProtKB:A0AC58HUZ0	InterPro	713
UniProtKB:A0AC58HUZ1	InterPro	752
UniProtKB:A0AC58HUZ3	InterPro	717
UniProtKB:A0AC58HUZ4	InterPro	812
UniProtKB:A0AC58HUZ5	InterPro	748
UniProtKB:A0AC58HUZ6	InterPro	744
UniProtKB:A0AC58HUZ7	InterPro	744
UniProtKB:A0AC58HUZ8	InterPro	704
UniProtKB:A0AC58HV00	InterPro	708
UniProtKB:A0AC58HV01	InterPro	605
UniProtKB:A0AC58HV05	InterPro	712
UniProtKB:A0AC58HV07	InterPro	755
UniProtKB:A0AC58HV09	InterPro	728
UniProtKB:A0AC58HV10	InterPro	598
UniProtKB:A0AC58HV17	InterPro	703
UniProtKB:A0AC58HV24	InterPro	713
UniProtKB:A0AC58HV28	InterPro	816
UniProtKB:A0AC58HV43	InterPro	740

Transcripts

Genome Browsers

ZFIN

Type	Name	Annotation Method	Length (nt)	Analysis
mRNA	gramd1b-201 (1) Ensembl	Ensembl	2,691 nt	Select Tool ZFIN BLAST
mRNA	gramd1b-202 (1) Ensembl	Ensembl	2,160 nt	Select Tool ZFIN BLAST
mRNA	gramd1b-203 (1) Ensembl	Ensembl	2,229 nt	Select Tool ZFIN BLAST
mRNA	gramd1b-204 (1) Ensembl	Ensembl	2,211 nt	Select Tool ZFIN BLAST
mRNA	gramd1b-205 (1) Ensembl	Ensembl	2,241 nt	Select Tool ZFIN BLAST

Interactions and Pathways

No data available

Antibodies

No data available

Plasmids

No data available

Constructs

Marker Relationships

Sequences

Genome Browsers

NCBI Map Viewer

ZFIN

Orthology

Comparative Orthology: Alliance

Citations