ZFIN is now using GRCz12tu for Genomic Data

Gene

rbm25a

ID

ZDB-GENE-090312-142

Name

RNA binding motif protein 25a

Symbol

rbm25a Nomenclature History

Previous Names

si:ch211-12d10.5

Type

protein_coding_gene

Location

Chr: 13 Mapping Details/Browsers

Genome Assembly

GRCz12tu

Annotation Status

Current

Description

Predicted to enable mRNA binding activity. Predicted to be involved in regulation of alternative mRNA splicing, via spliceosome. Predicted to be located in nucleus. Orthologous to human RBM25 (RNA binding motif protein 25).

Genome Resources

Note

None

Comparative Information

Expression

All Expression Data

No data available

Cross-Species Comparison

High Throughput Data

GEO (1)

Expression Atlas

UO scRNA-seq (UCSC browser)

Single Cell Expression Atlas

Daniocell

Thisse Expression Data

No data available

Wild Type Expression Summary

Phenotype

All Phenotype Data: No data available
Cross-Species Comparison: Alliance

Phenotype Summary

Mutations

Mutants

Sequence Targeting Reagents

Human Disease

Associated With rbm25a Human Ortholog

No data available

Associated With rbm25a Via Experimental Models

No data available

Gene Ontology

Protein Domains

Domain, Family, and Site Summary

Type	InterPro ID	Name
Domain	IPR000504	RNA recognition motif domain
Domain	IPR002483	PWI domain
Domain	IPR034268	RBM25, RNA recognition motif
Family	IPR052768	RNA-binding protein 25
Homologous_superfamily	IPR012677	Nucleotide-binding alpha-beta plait domain superfamily
Homologous_superfamily	IPR035979	RNA-binding domain superfamily
Homologous_superfamily	IPR036483	PWI domain superfamily

Domain Details Per Protein

Protein	Additional Resources	Length	Nucleotide-binding alpha-beta plait domain superfamily	PWI domain	PWI domain superfamily	RBM25, RNA recognition motif	RNA-binding domain superfamily	RNA-binding protein 25	RNA recognition motif domain
UniProtKB:A0A8M2B3B1	InterPro	805

Transcripts

Genome Browsers

ZFIN

Type	Name	Annotation Method	Length (nt)	Analysis
mRNA	rbm25a-201 (1) Ensembl	Ensembl	896 nt	Select Tool ZFIN BLAST
mRNA	rbm25a-202 (1) Ensembl	Ensembl	1,040 nt	Select Tool ZFIN BLAST
mRNA	rbm25a-204 (1) Ensembl	Ensembl	723 nt	Select Tool ZFIN BLAST
mRNA	rbm25a-205 (1) Ensembl	Ensembl	1,254 nt	Select Tool ZFIN BLAST
mRNA	rbm25a-206 (1) Ensembl	Ensembl	1,352 nt	Select Tool ZFIN BLAST
ncRNA	rbm25a-004 (1) Ensembl	Ensembl	729 nt	Select Tool ZFIN BLAST

Interactions and Pathways

No data available

Antibodies

No data available

Plasmids

No data available

Constructs

Marker Relationships

Sequences

Genome Browsers

NCBI Map Viewer

ZFIN

Orthology

Comparative Orthology: Alliance
Gene Tree: Ensembl

Citations