ZFIN is now using GRCz12tu for Genomic Data
Gene
cpne4a
- ID
- ZDB-GENE-060503-427
- Name
- copine IVa
- Symbol
- cpne4a Nomenclature History
- Previous Names
-
- si:dkey-11p23.1
- si:dkey-22o22.1
- Type
- protein_coding_gene
- Location
- Chr: 16 Mapping Details/Browsers
- Genome Assembly
- GRCz12tu
- Annotation Status
- Current
- Description
- Predicted to enable calcium-dependent phospholipid binding activity. Is expressed in ventral habenular nucleus. Orthologous to human CPNE4 (copine 4).
- Genome Resources
- Note
- None
- Comparative Information
-
- All Expression Data
- 1 figure from Pandey et al., 2018
- Cross-Species Comparison
- High Throughput Data
- Thisse Expression Data
- No data available
Wild Type Expression Summary
- All Phenotype Data
- No data available
- Cross-Species Comparison
- Alliance
Phenotype Summary
Mutations
Human Disease
Domain, Family, and Site Summary
| Type | InterPro ID | Name |
|---|---|---|
| Domain | IPR000008 | C2 domain |
| Domain | IPR002035 | von Willebrand factor, type A |
| Domain | IPR010734 | Copine, C-terminal |
| Domain | IPR037768 | Copine, C2B domain |
| Family | IPR045052 | Copine |
| Homologous_superfamily | IPR035892 | C2 domain superfamily |
| Homologous_superfamily | IPR036465 | von Willebrand factor A-like domain superfamily |
Domain Details Per Protein
| Protein | Additional Resources | Length | C2 domain | C2 domain superfamily | Copine | Copine, C2B domain | Copine, C-terminal | von Willebrand factor A-like domain superfamily | von Willebrand factor, type A |
|---|---|---|---|---|---|---|---|---|---|
| UniProtKB:A0A0R4IS92 | InterPro | 553 | |||||||
| UniProtKB:A0AC58HKT0 | InterPro | 553 | |||||||
| UniProtKB:A0AC58HKT7 | InterPro | 553 | |||||||
| UniProtKB:A0AC58HKU6 | InterPro | 553 |
- Genome Browsers
| Type | Name | Annotation Method | Has Havana Data | Length (nt) | Analysis |
|---|---|---|---|---|---|
| mRNA |
cpne4a-201
(1)
|
Ensembl | 2,580 nt | ||
| mRNA |
cpne4a-202
(1)
|
Ensembl | 999 nt | ||
| mRNA |
cpne4a-203
(1)
|
Ensembl | 1,623 nt |
Interactions and Pathways
No data available
Plasmids
No data available
- Genome Browsers