ZFIN is now using GRCz12tu for Genomic Data

Gene

limch1b

ID

ZDB-GENE-030131-9210

Name

LIM and calponin homology domains 1b

Symbol

limch1b Nomenclature History

Previous Names

limch1
fc38d05
fk03g12
wu:fc38d05 (1)
wu:fk03g12 (1)
zgc:175186 (1)

Type

protein_coding_gene

Location

Chr: 14 Mapping Details/Browsers

Genome Assembly

GRCz12tu

Annotation Status

Current

Description

Predicted to be located in actin cytoskeleton. Orthologous to human LIMCH1 (LIM and calponin homology domains 1).

Genome Resources

Note

None

Comparative Information

Expression

All Expression Data

No data available

Cross-Species Comparison

High Throughput Data

GEO (1)

Expression Atlas

UO scRNA-seq (UCSC browser)

Single Cell Expression Atlas

Daniocell

Thisse Expression Data

No data available

Wild Type Expression Summary

Phenotype

All Phenotype Data: No data available
Cross-Species Comparison: Alliance

Phenotype Summary

Mutations

Mutants

Sequence Targeting Reagents

Human Disease

Associated With limch1b Human Ortholog

No data available

Associated With limch1b Via Experimental Models

No data available

Gene Ontology

Protein Domains

Domain, Family, and Site Summary

Type	InterPro ID	Name
Domain	IPR001715	Calponin homology domain
Domain	IPR001781	Zinc finger, LIM-type
Domain	IPR031865	Domain of unknown function DUF4757
Homologous_superfamily	IPR036872	CH domain superfamily

Domain Details Per Protein

Protein	Additional Resources	Length
UniProtKB:A0A8M9QBD4	InterPro	1185
UniProtKB:A0A8M9QKV9	InterPro	1147
UniProtKB:A0A8M9PZK0	InterPro	1036
UniProtKB:A0A8M3AHT4	InterPro	1083
UniProtKB:A0A8M9QGL6	InterPro	1182
UniProtKB:A0A8M3ARW6	InterPro	1071
UniProtKB:A0A0R4IJJ4	InterPro	1020
UniProtKB:A0A8M9PZJ6	InterPro	1210
UniProtKB:A0A8M9QPD2	InterPro	1172
UniProtKB:A0A8M3B082	InterPro	1198
UniProtKB:A0AB32T0P9	InterPro	1024
UniProtKB:A0AB32T7N0	InterPro	1173
UniProtKB:A0AB32T7N5	InterPro	1135
UniProtKB:A0AB32T7P5	InterPro	1160
UniProtKB:A0AB32T9C8	InterPro	1170
UniProtKB:A0AC58H764	InterPro	1159
UniProtKB:A0AC58H772	InterPro	1046
UniProtKB:A0AC58H773	InterPro	1121
UniProtKB:A0AC58H774	InterPro	1145
UniProtKB:A0AC58H775	InterPro	1107
UniProtKB:A0AC58H778	InterPro	1045
UniProtKB:A0AC58H780	InterPro	1096
UniProtKB:A0AC58H781	InterPro	1058
UniProtKB:A0AC58H782	InterPro	1055
UniProtKB:A0AC58H784	InterPro	1018
UniProtKB:A0AC58H785	InterPro	961
UniProtKB:A0AC58H786	InterPro	1033
UniProtKB:A0AC58H787	InterPro	1030
UniProtKB:A0AC58H788	InterPro	1043
UniProtKB:A0AC58H789	InterPro	1008
UniProtKB:A0AC58H790	InterPro	999
UniProtKB:A0AC58H791	InterPro	992
UniProtKB:A0AC58H792	InterPro	1132
UniProtKB:A0AC58H793	InterPro	1134
UniProtKB:A0AC58H794	InterPro	981
UniProtKB:A0AC58H795	InterPro	909
UniProtKB:A0AC58H796	InterPro	872
UniProtKB:A0AC58H797	InterPro	884
UniProtKB:A0AC58H798	InterPro	969
UniProtKB:A0AC58H799	InterPro	980
UniProtKB:A0AC58H7A0	InterPro	881
UniProtKB:A0AC58H7A2	InterPro	1017
UniProtKB:A0AC58H7A3	InterPro	897
UniProtKB:A0AC58H7A4	InterPro	1005
UniProtKB:A0AC58H7A5	InterPro	1007
UniProtKB:A0AC58H7A6	InterPro	859
UniProtKB:A0AC58H7A7	InterPro	844
UniProtKB:A0AC58H7A8	InterPro	834
UniProtKB:A0AC58H7A9	InterPro	806
UniProtKB:A0AC58H7B4	InterPro	818
UniProtKB:A0AC58H7B6	InterPro	871
UniProtKB:A0AC58H7B8	InterPro	856
UniProtKB:A0AC58H7C1	InterPro	846
UniProtKB:A0ACD6B7E9	InterPro	1020

Transcripts

Genome Browsers

ZFIN

Type	Name	Annotation Method	Length (nt)	Analysis
mRNA	limch1b-202 (1) Ensembl	Ensembl	5,500 nt	Select Tool ZFIN BLAST
mRNA	limch1b-203 (1) Ensembl	Ensembl	604 nt	Select Tool ZFIN BLAST
mRNA	limch1b-204 (1) Ensembl	Ensembl	806 nt	Select Tool ZFIN BLAST
mRNA	limch1b-205 (1) Ensembl	Ensembl	613 nt	Select Tool ZFIN BLAST
ncRNA	limch1b-004 (1) Ensembl	Ensembl	571 nt	Select Tool ZFIN BLAST

Interactions and Pathways

No data available

Antibodies

No data available

Plasmids

No data available

Constructs

Marker Relationships

Sequences

Genome Browsers

NCBI Map Viewer

ZFIN

Orthology

Comparative Orthology: Alliance
Gene Tree: Ensembl

Citations