Mapping Details

GENETIC MAPPING PANELS

Chr	Location	Mapped As	Panel	Mapped By	Scoring
9	52.2 cM	z6845	Boston MGH Cross (MGH)	Fishman, Mark C.	Data
9	2718.0 cR	z6845	Goodfellow T51 (T51)	Geisler, Robert	Data
Note: Physical map location as displayed in the genome browsers is more precise than linkage map location. Note: Physical map location should be used whenever possible.

MAPPING FROM PUBLICATIONS

Marker	Type	Chr	Distance	Publication / Person	Comments
z559	SSLP	9		Gansner et al., 2008	Gansner, et al. (2008. Dev. Dyn. 237(12): 3715-3726.) reports mapping gulliver  ... Gansner, et al. (2008. Dev. Dyn. 237(12): 3715-3726.) reports mapping gulliver (m208) to LG9 between markers z6845 and z6430, z559 in a region containing col8a1a.
col8a1a	GENE	9		Gansner et al., 2008	Gansner, et al. (2008. Dev. Dyn. 237(12): 3715-3726.) reports mapping gulliver  ... Gansner, et al. (2008. Dev. Dyn. 237(12): 3715-3726.) reports mapping gulliver (m208) to LG9 between markers z6845 and z6430, z559 in a region containing col8a1a.
z6430	SSLP	9		Gansner et al., 2008	Gansner, et al. (2008. Dev. Dyn. 237(12): 3715-3726.) reports mapping gulliver  ... Gansner, et al. (2008. Dev. Dyn. 237(12): 3715-3726.) reports mapping gulliver (m208) to LG9 between markers z6845 and z6430, z559 in a region containing col8a1a.
m208	Feature	9		Gansner et al., 2008	Gansner, et al. (2008. Dev. Dyn. 237(12): 3715-3726.) reports mapping gulliver  ... Gansner, et al. (2008. Dev. Dyn. 237(12): 3715-3726.) reports mapping gulliver (m208) to LG9 between markers z6845 and z6430, z559 in a region containing col8a1a.
t21379	Feature	9	0.8 cM	Nica et al., 2004	Segregation linkage analysis mapped pou1f1 allele t21379 to a 0.5 cM interval  ... Segregation linkage analysis mapped pou1f1 allele t21379 to a 0.5 cM interval around 52 centimorgans from the North end of linkage group 9, between markers z17326 and z6645.
fb80e05	EST	9		Nica et al., 2004	Segregation linkage analysis mapped pou1f1 allele t21379 to a 0.5 cM interval  ... Segregation linkage analysis mapped pou1f1 allele t21379 to a 0.5 cM interval around 52 centimorgans from the North end of linkage group 9, between markers z17326 and z6645.
fi38c08	EST	9		Nica et al., 2004	Segregation linkage analysis mapped pou1f1 allele t21379 to a 0.5 cM interval  ... Segregation linkage analysis mapped pou1f1 allele t21379 to a 0.5 cM interval around 52 centimorgans from the North end of linkage group 9, between markers z17326 and z6645.
fi04c05	EST	9		Nica et al., 2004	Segregation linkage analysis mapped pou1f1 allele t21379 to a 0.5 cM interval  ... Segregation linkage analysis mapped pou1f1 allele t21379 to a 0.5 cM interval around 52 centimorgans from the North end of linkage group 9, between markers z17326 and z6645.
z17326	SSLP	9		Nica et al., 2004	Segregation linkage analysis mapped pou1f1 allele t21379 to a 0.5 cM interval  ... Segregation linkage analysis mapped pou1f1 allele t21379 to a 0.5 cM interval around 52 centimorgans from the North end of linkage group 9, between markers z17326 and z6645.

OTHER MAPPING INFORMATION

Chr 9 Gansner et al., 2008 Gansner, et al. (2008. Dev. Dyn. 237(12): 3715-3726.) reports mapping gulliver (m208) to LG9  ... Gansner, et al. (2008. Dev. Dyn. 237(12): 3715-3726.) reports mapping gulliver (m208) to LG9 between markers z6845 and z6430, z559 in a region containing col8a1a.

Primer Sets:

Strain	Bandsize	Restriction Enzyme	Annealing Temperature [C]
IND	186,146,150		60.0
Forward Primer	TCACATAAGCAAGAGCGCTG
Reverse Primer	AGTCTTTGTCCCATTTCACCC
AB	0,214,154		60.0
Forward Primer	TCACATAAGCAAGAGCGCTG
Reverse Primer	AGTCTTTGTCCCATTTCACCC
TU	208		60.0
Forward Primer	TCACATAAGCAAGAGCGCTG
Reverse Primer	AGTCTTTGTCCCATTTCACCC
EKW	0,214		60.0
Forward Primer	TCACATAAGCAAGAGCGCTG
Reverse Primer	AGTCTTTGTCCCATTTCACCC