ZFIN ID: ZDB-GENE-041014-322

Mapping Details

Gene Name: hemicentin 1
Symbol: hmcn1
PHYSICAL MAP AND BROWSER
Genome Browser Chr Position Assembly
ZFIN 20 37,430,398 - 37,602,543 GRCz12tu
NCBI Map Viewer 20 37,430,398 - 37,602,543 GRCz12tu
Ensembl 20 34,157,308 - 34,292,607 GRCz11
NCBI Map Viewer 20 34,157,308 - 34,292,607 GRCz11
UCSC 20 - GRCz11
Vega 20 34,254,429 - 34,389,728 GRCv10
Mapped Clones containing hmcn1
DKEYP-11G8 Chr: 20 Details
CH211-169J21 Chr: 20 Details
PHYSICAL MAPPING
Feature Chr Position Assembly Source DetailedSource Citations
sa9806 20 37,493,090 GRCz12tu DIRECT Sealy et al., 2025
20 34,219,904 GRCz11 DIRECT Busch-Nentwich et al., 2013
20 34,317,025 GRCz10 DIRECT Busch-Nentwich et al., 2013
20 34,244,512 Zv9 DIRECT Busch-Nentwich et al., 2013
sa11019 20 37,450,910 GRCz12tu DIRECT Sealy et al., 2025
20 34,177,726 GRCz11 DIRECT Busch-Nentwich et al., 2013
20 34,274,847 GRCz10 DIRECT Busch-Nentwich et al., 2013
20 34,202,334 Zv9 DIRECT Busch-Nentwich et al., 2013
sa16438 20 37,466,914 GRCz12tu DIRECT Sealy et al., 2025
20 34,193,730 GRCz11 DIRECT Busch-Nentwich et al., 2013
20 34,290,851 GRCz10 DIRECT Busch-Nentwich et al., 2013
20 34,218,338 Zv9 DIRECT Busch-Nentwich et al., 2013
sa17994 20 37,464,875 GRCz12tu DIRECT Sealy et al., 2025
20 34,191,691 GRCz11 DIRECT Busch-Nentwich et al., 2013
20 34,288,812 GRCz10 DIRECT Busch-Nentwich et al., 2013
20 34,216,299 Zv9 DIRECT Busch-Nentwich et al., 2013
sa19239 20 37,450,910 GRCz12tu DIRECT Sealy et al., 2025
20 34,177,726 GRCz11 DIRECT Busch-Nentwich et al., 2013
20 34,274,847 GRCz10 DIRECT Busch-Nentwich et al., 2013
20 34,202,334 Zv9 DIRECT Busch-Nentwich et al., 2013
sa23756 20 37,445,020 GRCz12tu DIRECT Sealy et al., 2025
20 34,171,930 GRCz11 DIRECT Busch-Nentwich et al., 2013
20 34,269,051 GRCz10 DIRECT Busch-Nentwich et al., 2013
20 34,196,538 Zv9 DIRECT Busch-Nentwich et al., 2013
sa23757 20 37,485,844 GRCz12tu DIRECT Sealy et al., 2025
20 34,212,658 GRCz11 DIRECT Busch-Nentwich et al., 2013
20 34,309,779 GRCz10 DIRECT Busch-Nentwich et al., 2013
20 34,237,266 Zv9 DIRECT Busch-Nentwich et al., 2013
sa30717 20 37,444,276 GRCz12tu DIRECT Sealy et al., 2025
20 34,171,186 GRCz11 DIRECT Busch-Nentwich et al., 2013
20 34,268,307 GRCz10 DIRECT Busch-Nentwich et al., 2013
20 34,195,794 Zv9 DIRECT Busch-Nentwich et al., 2013
sa32306 20 37,444,450 GRCz12tu DIRECT Sealy et al., 2025
20 34,171,360 GRCz11 DIRECT Busch-Nentwich et al., 2013
20 34,268,481 GRCz10 DIRECT Busch-Nentwich et al., 2013
20 34,195,968 Zv9 DIRECT Busch-Nentwich et al., 2013
sa32307 20 37,481,133 GRCz12tu DIRECT Sealy et al., 2025
20 34,207,947 GRCz11 DIRECT Busch-Nentwich et al., 2013
20 34,305,068 GRCz10 DIRECT Busch-Nentwich et al., 2013
20 34,232,555 Zv9 DIRECT Busch-Nentwich et al., 2013
sa37092 20 37,459,687 GRCz12tu DIRECT Sealy et al., 2025
20 34,186,503 GRCz11 DIRECT Busch-Nentwich et al., 2013
20 34,283,624 GRCz10 DIRECT Busch-Nentwich et al., 2013
20 34,211,111 Zv9 DIRECT Busch-Nentwich et al., 2013
sa37093 20 37,468,607 GRCz12tu DIRECT Sealy et al., 2025
20 34,195,423 GRCz11 DIRECT Busch-Nentwich et al., 2013
20 34,292,544 GRCz10 DIRECT Busch-Nentwich et al., 2013
20 34,220,031 Zv9 DIRECT Busch-Nentwich et al., 2013
sa37094 20 37,492,822 GRCz12tu DIRECT Sealy et al., 2025
20 34,219,636 GRCz11 DIRECT Busch-Nentwich et al., 2013
20 34,316,757 GRCz10 DIRECT Busch-Nentwich et al., 2013
20 34,244,244 Zv9 DIRECT Busch-Nentwich et al., 2013
sa37095 20 37,492,884 GRCz12tu DIRECT Sealy et al., 2025
20 34,219,698 GRCz11 DIRECT Busch-Nentwich et al., 2013
20 34,316,819 GRCz10 DIRECT Busch-Nentwich et al., 2013
20 34,244,306 Zv9 DIRECT Busch-Nentwich et al., 2013
sa39291 20 37,478,835 GRCz12tu DIRECT Sealy et al., 2025
20 34,205,649 GRCz11 DIRECT Busch-Nentwich et al., 2013
20 34,302,770 GRCz10 DIRECT Busch-Nentwich et al., 2013
20 34,230,257 Zv9 DIRECT Busch-Nentwich et al., 2013
sa43488 20 37,431,868 GRCz12tu DIRECT Sealy et al., 2025
20 34,158,778 GRCz11 DIRECT Busch-Nentwich et al., 2013
20 34,255,899 GRCz10 DIRECT Busch-Nentwich et al., 2013
20 34,183,386 Zv9 DIRECT Busch-Nentwich et al., 2013
sa43489 20 37,463,938 GRCz12tu DIRECT Sealy et al., 2025
20 34,190,754 GRCz11 DIRECT Busch-Nentwich et al., 2013
20 34,287,875 GRCz10 DIRECT Busch-Nentwich et al., 2013
20 34,215,362 Zv9 DIRECT Busch-Nentwich et al., 2013
fr22 20 GRCz11 GENERAL_LOAD load data [singleton]
tq207 20 GRCz11 GENERAL_LOAD load data [singleton]
fr22 20 GRCz11 OTHER_MAPPING linkagesDirectMem1
20 GRCz11 OTHER_MAPPING linkagesDirectMem2
20 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
20 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneLinkage
mn0263Gt 20 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneLinkage
20 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
sa9806 20 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneLinkage
20 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
sa11019 20 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
20 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneLinkage
sa16438 20 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneLinkage
20 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
sa17994 20 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneLinkage
20 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
sa19239 20 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneLinkage
20 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
sa23756 20 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
20 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneLinkage
sa23757 20 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneLinkage
20 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
sa30717 20 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
20 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneLinkage
sa32306 20 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneLinkage
20 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
sa32307 20 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
20 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneLinkage
sa37092 20 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneLinkage
20 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
sa37093 20 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneLinkage
20 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
sa37094 20 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
20 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneLinkage
sa37095 20 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
20 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneLinkage
sa39291 20 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneLinkage
20 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
sa43488 20 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
20 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneLinkage
sa43489 20 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
20 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneLinkage
ta84 20 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
20 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneLinkage
tb22 20 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneLinkage
20 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
tc8 20 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneLinkage
20 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
te335 20 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneLinkage
20 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
tg254b 20 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneLinkage
20 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
tj258a 20 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
20 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneLinkage
tl28b 20 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneLinkage
20 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
tl246a 20 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneLinkage
20 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
tm42b 20 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneLinkage
20 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
tm51 20 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneLinkage
20 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
tm68 20 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneLinkage
20 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
tm147c 20 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
20 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneLinkage
tn3 20 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
20 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneLinkage
tn210 20 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
20 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneLinkage
tp41a 20 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
20 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneLinkage
tq207 20 GRCz11 OTHER_MAPPING directMappedMarker
20 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
20 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneLinkage
20 GRCz11 OTHER_MAPPING linkagesDirectMem1
20 GRCz11 OTHER_MAPPING linkagesDirectMem2
20 GRCz11 OTHER_MAPPING paneledMarkersDirect
tq274 20 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneLinkage
20 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
tr3 20 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
20 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneLinkage
tt231 20 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
20 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneLinkage
tu27a 20 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
20 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneLinkage
tw234b 20 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
20 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneLinkage
ty58 20 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneLinkage
20 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
ty124b 20 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
20 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneLinkage

GENETIC MAPPING PANELS: No data available
MAPPING FROM PUBLICATIONS
Marker Type Chr Distance Publication / Person Comments
z35375 SSLP 20 Carney et al., 2010
tq207 Feature 20 Carney et al., 2010
fr22 Feature 20 Carney et al., 2010

OTHER MAPPING INFORMATION
Chr 20 Carney et al., 2010
Genomic Feature tq207 is an allele of hmcn1
Chr Location Mapped As Panel Mapped By Scoring
20 76.4 cM tq207 Boston MGH Cross (MGH) Geisler, Robert Data
Note: Physical map location as displayed in the genome browsers is more precise than linkage map location.
Physical map location should be used whenever possible.
Genomic Feature fr22 is an allele of hmcn1
Marker Type Chr Distance Publication / Person Comments
tq207 Feature 20 Carney et al., 2010
hmcn1 GENE 20 Carney et al., 2010
z35375 SSLP 20 Carney et al., 2010
Genomic Feature tq207 is an allele of hmcn1
Marker Type Chr Distance Publication / Person Comments
hmcn1 GENE 20 Carney et al., 2010
z35375 SSLP 20 Carney et al., 2010
fr22 Feature 20 Carney et al., 2010
Genomic Feature fr22 is an allele of hmcn1
Chr 20 Carney et al., 2010
Genomic Feature tq207 is an allele of hmcn1
Chr 20 Carney et al., 2010
Genomic Feature te335 is an allele of hmcn1
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