ZFIN ID: ZDB-GENE-010601-1

Mapping Details

Gene Name: valyl-tRNA synthetase 1
Symbol: vars1
PHYSICAL MAP AND BROWSER
Genome Browser Chr Position Assembly
ZFIN 16 10,698,751 - 10,740,090 GRCz12tu
NCBI Map Viewer 16 10,698,751 - 10,740,090 GRCz12tu
Ensembl 16 10,429,770 - 10,475,814 GRCz11
NCBI Map Viewer 16 10,429,879 - 10,475,815 GRCz11
UCSC 16 - GRCz11
Vega 16 10,538,868 - 10,584,912 GRCv10
Mapped Clones containing vars1
CH73-54F23 Chr: 16 Details
PHYSICAL MAPPING
Feature Chr Position Assembly Source DetailedSource Citations
hi558Tg 16 10,430,106 - 10,430,107 GRCz11 DIRECT ZFIN Curated Data
lv101 16 10,461,403 - 10,461,406 GRCz11 DIRECT Siekierska et al., 2019
sa22767 16 10,730,026 GRCz12tu DIRECT Sealy et al., 2025
16 10,463,267 GRCz11 DIRECT Busch-Nentwich et al., 2013
16 10,572,365 GRCz10 DIRECT Busch-Nentwich et al., 2013
16 12,072,699 Zv9 DIRECT Busch-Nentwich et al., 2013
sa42669 16 10,712,801 GRCz12tu DIRECT Sealy et al., 2025
16 10,444,005 GRCz11 DIRECT Busch-Nentwich et al., 2013
16 10,553,103 GRCz10 DIRECT Busch-Nentwich et al., 2013
16 12,053,437 Zv9 DIRECT Busch-Nentwich et al., 2013
sa44838 16 10,707,893 GRCz12tu DIRECT Sealy et al., 2025
16 10,439,043 GRCz11 DIRECT Busch-Nentwich et al., 2013
16 10,548,141 GRCz10 DIRECT Busch-Nentwich et al., 2013
16 12,048,475 Zv9 DIRECT Busch-Nentwich et al., 2013
la027672Tg 16 12,039,843 - 12,039,853 Zv9 ZFIN_Zv9 BurgessLin
hi558Tg 16 GRCz11 OTHER_MAPPING Feature location obtained from related gene that has mapped_marker info
16 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
16 GRCz11 OTHER_MAPPING featureLocationPullThruFromGenePaneledMarkers
22 GRCz11 OTHER_MAPPING featureLocationPullThruFromGenePaneledMarkers
la027672Tg 22 GRCz11 OTHER_MAPPING featureLocationPullThruFromGenePaneledMarkers
16 GRCz11 OTHER_MAPPING Feature location obtained from related gene that has mapped_marker info
16 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
16 GRCz11 OTHER_MAPPING featureLocationPullThruFromGenePaneledMarkers
lv101 22 GRCz11 OTHER_MAPPING featureLocationPullThruFromGenePaneledMarkers
16 GRCz11 OTHER_MAPPING Feature location obtained from related gene that has mapped_marker info
16 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
16 GRCz11 OTHER_MAPPING featureLocationPullThruFromGenePaneledMarkers
sa22767 22 GRCz11 OTHER_MAPPING featureLocationPullThruFromGenePaneledMarkers
16 GRCz11 OTHER_MAPPING featureLocationPullThruFromGenePaneledMarkers
16 GRCz11 OTHER_MAPPING Feature location obtained from related gene that has mapped_marker info
16 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
sa42669 16 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
16 GRCz11 OTHER_MAPPING featureLocationPullThruFromGenePaneledMarkers
22 GRCz11 OTHER_MAPPING featureLocationPullThruFromGenePaneledMarkers
16 GRCz11 OTHER_MAPPING Feature location obtained from related gene that has mapped_marker info
sa44838 16 GRCz11 OTHER_MAPPING featureLocationPullThruFromGenePaneledMarkers
22 GRCz11 OTHER_MAPPING featureLocationPullThruFromGenePaneledMarkers
16 GRCz11 OTHER_MAPPING Feature location obtained from related gene that has mapped_marker info
16 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse

GENETIC MAPPING PANELS
Chr Location Mapped As Panel Mapped By Scoring
16 656.0 cR vars1 Goodfellow T51 (T51) Geisler, Robert Data
16 634.0 cR vars2 Goodfellow T51 (T51) Zhou, Yi Data
16 27.6 cM vars2 Heat Shock (HS) Woods, Ian G. Data
Note: Physical map location as displayed in the genome browsers is more precise than linkage map location.
Physical map location should be used whenever possible.

OTHER MAPPING INFORMATION
Markers Encoded by vars1
zk18d13.sp6 Chr: 22 Details
fb07a11 Chr: 16 Details
Genomic Feature lv101 is an allele of vars1
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