ZFIN ID: ZDB-GENE-001212-1

Mapping Details

Gene Name: ATPase Na+/K+ transporting subunit alpha 1a, tandem duplicate 1
Symbol: atp1a1a.1
PHYSICAL MAP AND BROWSER
Genome Browser Chr Position Assembly
ZFIN 1 2,448,286 - 2,467,681 GRCz12tu
NCBI Map Viewer 1 2,448,286 - 2,467,681 GRCz12tu
Ensembl 1 1,712,140 - 1,731,564 GRCz11
NCBI Map Viewer 1 1,712,169 - 1,731,564 GRCz11
UCSC 1 - GRCz11
Vega 1 1,564,346 - 1,645,577 GRCv10
Mapped Clones containing atp1a1a.1
DKEY-208K14 Chr: 1 Details
PHYSICAL MAPPING
Feature Chr Position Assembly Source DetailedSource Citations
la1 1 1,723,701 - 1,723,759 GRCz11 DIRECT Shu et al., 2003
m883 1 1,721,783 GRCz11 DIRECT ZFIN Curated Data
mw15b 1 1,723,701 - 1,723,763 GRCz11 DIRECT Yuan et al., 2004
sa12184 1 2,459,626 GRCz12tu DIRECT Sealy et al., 2025
1 1,723,509 GRCz11 DIRECT Busch-Nentwich et al., 2013
1 1,575,715 GRCz10 DIRECT Busch-Nentwich et al., 2013
1 1,480,295 Zv9 DIRECT Busch-Nentwich et al., 2013
sa13646 1 2,453,958 GRCz12tu DIRECT Sealy et al., 2025
1 1,717,841 GRCz11 DIRECT Busch-Nentwich et al., 2013
1 1,570,047 GRCz10 DIRECT Busch-Nentwich et al., 2013
1 1,474,627 Zv9 DIRECT Busch-Nentwich et al., 2013
sa15598 1 2,457,900 GRCz12tu DIRECT Sealy et al., 2025
1 1,721,783 GRCz11 DIRECT Busch-Nentwich et al., 2013
1 1,573,989 GRCz10 DIRECT Busch-Nentwich et al., 2013
1 1,478,569 Zv9 DIRECT Busch-Nentwich et al., 2013
sa19398 1 2,454,999 GRCz12tu DIRECT Sealy et al., 2025
1 1,718,882 GRCz11 DIRECT Busch-Nentwich et al., 2013
1 1,571,088 GRCz10 DIRECT Busch-Nentwich et al., 2013
1 1,475,668 Zv9 DIRECT Busch-Nentwich et al., 2013
sa31185 1 2,448,475 GRCz12tu DIRECT Sealy et al., 2025
1 1,712,358 GRCz11 DIRECT Busch-Nentwich et al., 2013
1 1,564,564 GRCz10 DIRECT Busch-Nentwich et al., 2013
1 1,469,144 Zv9 DIRECT Busch-Nentwich et al., 2013
sa38236 1 2,460,538 GRCz12tu DIRECT Sealy et al., 2025
1 1,724,421 GRCz11 DIRECT Busch-Nentwich et al., 2013
1 1,576,627 GRCz10 DIRECT Busch-Nentwich et al., 2013
1 1,481,207 Zv9 DIRECT Busch-Nentwich et al., 2013
tx218 1 1,723,677 GRCz11 DIRECT Pott et al., 2018
la028094Tg 1 1,469,800 - 1,469,810 Zv9 ZFIN_Zv9 BurgessLin
m883 1 GRCz11 GENERAL_LOAD load data [singleton]
hi3475Tg 1 GRCz11 OTHER_MAPPING Feature location obtained from related gene that has mapped_marker info
1 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
1 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneLinkage
1 GRCz11 OTHER_MAPPING featureLocationPullThruFromGenePaneledMarkers
la1 1 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneLinkage
1 GRCz11 OTHER_MAPPING Feature location obtained from related gene that has mapped_marker info
1 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
1 GRCz11 OTHER_MAPPING linkagesDirectMem2
1 GRCz11 OTHER_MAPPING linkagesDirectMem1
1 GRCz11 OTHER_MAPPING featureLocationPullThruFromGenePaneledMarkers
la028094Tg 1 GRCz11 OTHER_MAPPING Feature location obtained from related gene that has mapped_marker info
1 GRCz11 OTHER_MAPPING featureLocationPullThruFromGenePaneledMarkers
1 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneLinkage
1 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
m115 1 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneLinkage
1 GRCz11 OTHER_MAPPING Feature location obtained from related gene that has mapped_marker info
1 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
1 GRCz11 OTHER_MAPPING featureLocationPullThruFromGenePaneledMarkers
m273 1 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneLinkage
1 GRCz11 OTHER_MAPPING Feature location obtained from related gene that has mapped_marker info
1 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
1 GRCz11 OTHER_MAPPING featureLocationPullThruFromGenePaneledMarkers
m291 1 GRCz11 OTHER_MAPPING featureLocationPullThruFromGenePaneledMarkers
1 GRCz11 OTHER_MAPPING Feature location obtained from related gene that has mapped_marker info
1 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
1 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneLinkage
m523 1 GRCz11 OTHER_MAPPING Feature location obtained from related gene that has mapped_marker info
1 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
1 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneLinkage
1 GRCz11 OTHER_MAPPING featureLocationPullThruFromGenePaneledMarkers
m883 1 GRCz11 OTHER_MAPPING Feature location obtained from related gene that has mapped_marker info
1 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
1 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneLinkage
1 GRCz11 OTHER_MAPPING featureLocationPullThruFromGenePaneledMarkers
1 GRCz11 OTHER_MAPPING linkagesDirectMem1
1 GRCz11 OTHER_MAPPING linkagesDirectMem2
mw15b 1 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneLinkage
1 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
1 GRCz11 OTHER_MAPPING Feature location obtained from related gene that has mapped_marker info
1 GRCz11 OTHER_MAPPING featureLocationPullThruFromGenePaneledMarkers
s646 1 GRCz11 OTHER_MAPPING Feature location obtained from related gene that has mapped_marker info
1 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
1 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneLinkage
1 GRCz11 OTHER_MAPPING featureLocationPullThruFromGenePaneledMarkers
sa12184 1 GRCz11 OTHER_MAPPING Feature location obtained from related gene that has mapped_marker info
1 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneLinkage
1 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
1 GRCz11 OTHER_MAPPING featureLocationPullThruFromGenePaneledMarkers
sa13646 1 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
1 GRCz11 OTHER_MAPPING Feature location obtained from related gene that has mapped_marker info
1 GRCz11 OTHER_MAPPING featureLocationPullThruFromGenePaneledMarkers
1 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneLinkage
sa15598 1 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneLinkage
1 GRCz11 OTHER_MAPPING Feature location obtained from related gene that has mapped_marker info
1 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
1 GRCz11 OTHER_MAPPING featureLocationPullThruFromGenePaneledMarkers
sa19398 1 GRCz11 OTHER_MAPPING Feature location obtained from related gene that has mapped_marker info
1 GRCz11 OTHER_MAPPING featureLocationPullThruFromGenePaneledMarkers
1 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneLinkage
1 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
sa31185 1 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneLinkage
1 GRCz11 OTHER_MAPPING Feature location obtained from related gene that has mapped_marker info
1 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
1 GRCz11 OTHER_MAPPING featureLocationPullThruFromGenePaneledMarkers
sa38236 1 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
1 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneLinkage
1 GRCz11 OTHER_MAPPING featureLocationPullThruFromGenePaneledMarkers
1 GRCz11 OTHER_MAPPING Feature location obtained from related gene that has mapped_marker info
tj223 1 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
1 GRCz11 OTHER_MAPPING Feature location obtained from related gene that has mapped_marker info
1 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneLinkage
1 GRCz11 OTHER_MAPPING featureLocationPullThruFromGenePaneledMarkers
tl30 1 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
1 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneLinkage
1 GRCz11 OTHER_MAPPING featureLocationPullThruFromGenePaneledMarkers
1 GRCz11 OTHER_MAPPING Feature location obtained from related gene that has mapped_marker info
tm52 1 GRCz11 OTHER_MAPPING featureLocationPullThruFromGenePaneledMarkers
1 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneLinkage
1 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
1 GRCz11 OTHER_MAPPING Feature location obtained from related gene that has mapped_marker info
to273a 1 GRCz11 OTHER_MAPPING featureLocationPullThruFromGenePaneledMarkers
1 GRCz11 OTHER_MAPPING directMappedMarker
1 GRCz11 OTHER_MAPPING Feature location obtained from related gene that has mapped_marker info
1 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
1 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneLinkage
1 GRCz11 OTHER_MAPPING paneledMarkersDirect
tu236 1 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
1 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneLinkage
1 GRCz11 OTHER_MAPPING featureLocationPullThruFromGenePaneledMarkers
1 GRCz11 OTHER_MAPPING Feature location obtained from related gene that has mapped_marker info
tw3b 1 GRCz11 OTHER_MAPPING Feature location obtained from related gene that has mapped_marker info
1 GRCz11 OTHER_MAPPING featureLocationPullThruFromGenePaneledMarkers
1 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneLinkage
1 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
tx218 1 GRCz11 OTHER_MAPPING Feature location obtained from related gene that has mapped_marker info
1 GRCz11 OTHER_MAPPING featureLocationPullThruFromGenePaneledMarkers
1 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneLinkage
1 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
zko58a 1 GRCz11 OTHER_MAPPING featureLocationPullThruFromGenePaneledMarkers
1 GRCz11 OTHER_MAPPING Feature location obtained from related gene that has mapped_marker info
1 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
1 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneLinkage
zko58b 1 GRCz11 OTHER_MAPPING Feature location obtained from related gene that has mapped_marker info
1 GRCz11 OTHER_MAPPING featureLocationPullThruFromGenePaneledMarkers
1 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneLinkage
1 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse

GENETIC MAPPING PANELS
Chr Location Mapped As Panel Mapped By Scoring
1 0.0 cM atp1a1a_1 Heat Shock (HS) Woods, Ian G. Data
Note: Physical map location as displayed in the genome browsers is more precise than linkage map location.
Physical map location should be used whenever possible.
MAPPING FROM PUBLICATIONS
Marker Type Chr Distance Publication / Person Comments
z9382 SSLP 1 Rajarao et al., 2001 Rajarao, et al. (2001. Genome Res 11:1211-1220.) report mapping atp1a1a.1 to  ...
z9394 SSLP 1 Rajarao et al., 2001 Rajarao, et al. (2001. Genome Res 11:1211-1220.) report mapping atp1a1a.1 to  ...

OTHER MAPPING INFORMATION
Chr 1 Rajarao et al., 2001 Rajarao, et al. (2001. Genome Res 11:1211-1220.) report mapping atp1a1a.1 to LG01 between z9382 and  ...
Markers Encoded by atp1a1a.1
fa03c03 Chr: 1 Details
Genomic Feature to273a is an allele of atp1a1a.1
Chr Location Mapped As Panel Mapped By Scoring
1 8.5 cM to273a Boston MGH Cross (MGH) Geisler, Robert Data
Note: Physical map location as displayed in the genome browsers is more precise than linkage map location.
Physical map location should be used whenever possible.
Genomic Feature la1 is an allele of atp1a1a.1
Marker Type Chr Distance Publication / Person Comments
z6384 SSLP 1 0.12 cM Shu et al., 2003 Shu et al. (2003, Development 130(25):6165-6173) mapped heart and mind (had) to LG1 close to SSLP z6384 using a meiotic mapping panel.
Genomic Feature m883 is an allele of atp1a1a.1
Marker Type Chr Distance Publication / Person Comments
z6384 SSLP 1 Ellertsdottir et al., 2006 Fine mapping with a single embryo panel representing 246 meioses revealed no  ...
z12036 SSLP 1 Ellertsdottir et al., 2006 Fine mapping with a single embryo panel representing 246 meioses revealed no  ...
Genomic Feature m883 is an allele of atp1a1a.1
Chr 1 Ellertsdottir et al., 2006 Fine mapping with a single embryo panel representing 246 meioses revealed no recombination events  ...
Genomic Feature zko58a is an allele of atp1a1a.1
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