ZFIN ID: ZDB-GENE-010328-8

Mapping Details

Gene Name:	claudin 3c
Symbol:	cldn3c

PHYSICAL MAP AND BROWSER

Genome Browser	Chr	Position	Assembly
ZFIN	21	27,184,584 - 27,186,541	GRCz12tu
NCBI Map Viewer	21	27,184,584 - 27,186,541	GRCz12tu
Ensembl	21	25,739,295 - 25,741,411	GRCz11
NCBI Map Viewer	21	25,739,296 - 25,741,253	GRCz11
UCSC	21	-	GRCz11
Vega	21	25,702,690 - 25,704,806	GRCv10

Mapped Clones containing cldn3c
DKEY-17E16	Chr: 21 Details

PHYSICAL MAPPING

Feature	Chr	Position	Assembly	Source	DetailedSource	Citations
sa6673	21	27,186,072	GRCz12tu	DIRECT		Sealy et al., 2025
	21	25,740,784	GRCz11	DIRECT		Busch-Nentwich et al., 2013
	21	25,704,179	GRCz10	DIRECT		Busch-Nentwich et al., 2013
	21	25,120,842	Zv9	DIRECT		Busch-Nentwich et al., 2013
sa43654	21	27,185,970	GRCz12tu	DIRECT		Sealy et al., 2025
	21	25,740,682	GRCz11	DIRECT		Busch-Nentwich et al., 2013
	21	25,704,077	GRCz10	DIRECT		Busch-Nentwich et al., 2013
	21	25,120,740	Zv9	DIRECT		Busch-Nentwich et al., 2013
sa6673	21		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGenePaneledMarkers
	21		GRCz11	OTHER_MAPPING	Feature location obtained from related gene that has mapped_marker info
sa43654	21		GRCz11	OTHER_MAPPING	Feature location obtained from related gene that has mapped_marker info
	21		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGenePaneledMarkers
zf3542	21		GRCz11	OTHER_MAPPING	Feature location obtained from related gene that has mapped_marker info
	21		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGenePaneledMarkers

GENETIC MAPPING PANELS
Chr	Location	Mapped As	Panel	Mapped By	Scoring
21	70.5 cM	cldnh	Heat Shock (HS)	Woods, Ian G.	Data

Note: Physical map location as displayed in the genome browsers is more precise than linkage map location. Note: Physical map location should be used whenever possible.

Chr 21

Kollmar et al., 2001

Kollmar, et al. (2001. Proc Natl Acad Sci 98:10196-10201.) report mapping cldnh to LG21 on the T51 ...

Genomic Feature sa6673 is an allele of cldn3c