ZFIN ID: ZDB-GENE-090312-196

ZFIN ID: ZDB-GENE-090312-196

Mapping Details

Gene Name:	collagen, type XIX, alpha 1
Symbol:	col19a1

PHYSICAL MAP AND BROWSER

Genome Browser	Chr	Position	Assembly
ZFIN	13	42,319,016 - 42,420,866	GRCz12tu
NCBI Map Viewer	13	42,319,016 - 42,420,866	GRCz12tu
Ensembl	13	38,990,939 - 39,115,963	GRCz11
Ensembl	13	38,814,521 - 38,856,156	GRCz11
NCBI Map Viewer	13	38,814,521 - 38,856,158	GRCz11
UCSC	13	-	GRCz11
UCSC	13	-	GRCz11
UCSC	13	-	GRCz11
Vega	13	38,688,631 - 38,730,266	GRCv10
Vega	13	38,865,049 - 38,990,073	GRCv10

Mapped Clones containing col19a1
CH73-52H17	Chr: 13 Details
DKEY-180F8	Chr: 13 Details
DKEY-49L3	Chr: 13 Details
CH211-37A16	Chr: 13 Details
CH211-153A20	Chr: 13 Details

PHYSICAL MAPPING

Feature	Chr	Position	Assembly	Source	DetailedSource	Citations
sa22363	13	42,582,371	GRCz12tu	DIRECT		Sealy et al., 2025
	13	39,073,710	GRCz11	DIRECT		Busch-Nentwich et al., 2013
	13	38,947,820	GRCz10	DIRECT		Busch-Nentwich et al., 2013
	13	39,633,719	Zv9	DIRECT		Busch-Nentwich et al., 2013
sa42271	13	42,547,538	GRCz12tu	DIRECT		Sealy et al., 2025
	13	39,038,860	GRCz11	DIRECT		Busch-Nentwich et al., 2013
	13	38,912,970	GRCz10	DIRECT		Busch-Nentwich et al., 2013
	13	39,598,869	Zv9	DIRECT		Busch-Nentwich et al., 2013
sa42272	13	42,547,584	GRCz12tu	DIRECT		Sealy et al., 2025
	13	39,038,906	GRCz11	DIRECT		Busch-Nentwich et al., 2013
	13	38,913,016	GRCz10	DIRECT		Busch-Nentwich et al., 2013
	13	39,598,915	Zv9	DIRECT		Busch-Nentwich et al., 2013
sa42273	13	42,568,038	GRCz12tu	DIRECT		Sealy et al., 2025
	13	39,059,376	GRCz11	DIRECT		Busch-Nentwich et al., 2013
	13	38,933,486	GRCz10	DIRECT		Busch-Nentwich et al., 2013
	13	39,619,385	Zv9	DIRECT		Busch-Nentwich et al., 2013
b393	13		GRCz11	GENERAL_LOAD	load data [singleton]
	13		GRCz11	OTHER_MAPPING	linkagesDirectMem1
	13		GRCz11	OTHER_MAPPING	linkagesDirectMem2
	13		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGeneGBrowse
	13		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGeneLinkage
b398	13		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGeneGBrowse
	13		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGeneLinkage
col19a1_unspecified	13		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGeneGBrowse
	13		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGeneLinkage
p37er	13		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGeneGBrowse
	13		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGeneLinkage
sa22363	13		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGeneGBrowse
	13		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGeneLinkage
sa42271	13		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGeneGBrowse
	13		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGeneLinkage
sa42272	13		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGeneGBrowse
	13		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGeneLinkage
sa42273	13		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGeneGBrowse
	13		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGeneLinkage

GENETIC MAPPING PANELS: No data available

MAPPING FROM PUBLICATIONS
Marker	Type	Chr	Distance	Publication / Person
z44520b	SSLP	13		Hilario et al., 2010
z25253	SSLP	13		Hilario et al., 2010
b393	Feature	13	0.0 KB	Hilario et al., 2010

Genomic Feature b393 is an allele of col19a1

Marker	Type	Chr	Distance	Publication / Person	Comments
z44520b	SSLP	13	19.3 cM	Hilario et al., 2010
z25253	SSLP	13	2.1 cM	Hilario et al., 2010
col19a1	GENE	13	0.0 KB	Hilario et al., 2010
z9995	SSLP	13		Beattie et al., 2000	Beattie, et al. (2000. Dev 127:2653-2662.), outcrossed stumpy (on AB background) to WIK and SJD strains to create polymorphic mapping lines. z9995 and z3424 segregated with stumpy^b393* in all of the 50 mutants tested, placing this mutation on LG13.
z3424	SSLP	13		Beattie et al., 2000	Beattie, et al. (2000. Dev 127:2653-2662.), outcrossed stumpy (on AB background) to WIK and SJD strains to create polymorphic mapping lines. z9995 and z3424 segregated with stumpy^b393* in all of the 50 mutants tested, placing this mutation on LG13.

Genomic Feature b393 is an allele of col19a1

Chr 13

Beattie et al., 2000

Beattie, et al. (2000. Dev 127:2653-2662.), outcrossed stumpy (on *AB background) to WIK and ...

Genomic Feature sa42272 is an allele of col19a1