ZFIN ID: ZDB-GENE-030321-1

ZFIN ID: ZDB-GENE-030321-1

Mapping Details

Gene Name:	GLI family zinc finger 1
Symbol:	gli1

PHYSICAL MAP AND BROWSER

Genome Browser	Chr	Position	Assembly
ZFIN	6	61,993,980 - 62,080,824	GRCz12tu
NCBI Map Viewer	6	61,993,980 - 62,080,824	GRCz12tu
NCBI Map Viewer	6	59,426,148 - 59,505,589	GRCz11

PHYSICAL MAPPING

Feature	Chr	Position	Assembly	Source	Citations
sa8554	6	59,439,991	GRCz11	DIRECT	Busch-Nentwich et al., 2013
	6	59,444,779	GRCz10	DIRECT	Busch-Nentwich et al., 2013
	1	30,733,084	Zv9	DIRECT	Busch-Nentwich et al., 2013
sa31210	6	61,997,492	GRCz12tu	DIRECT	Sealy et al., 2025
	6	59,429,619	GRCz11	DIRECT	Busch-Nentwich et al., 2013
	6	59,434,407	GRCz10	DIRECT	Busch-Nentwich et al., 2013
	1	30,743,456	Zv9	DIRECT	Busch-Nentwich et al., 2013
sa32697	6	61,997,220	GRCz12tu	DIRECT	Sealy et al., 2025
	6	59,429,344	GRCz11	DIRECT	Busch-Nentwich et al., 2013
	6	59,434,132	GRCz10	DIRECT	Busch-Nentwich et al., 2013
	1	30,743,731	Zv9	DIRECT	Busch-Nentwich et al., 2013
sa38271	6	62,000,673	GRCz12tu	DIRECT	Sealy et al., 2025
	6	59,432,800	GRCz11	DIRECT	Busch-Nentwich et al., 2013
	6	59,437,588	GRCz10	DIRECT	Busch-Nentwich et al., 2013
	1	30,740,275	Zv9	DIRECT	Busch-Nentwich et al., 2013
la028128Tg	1	30,721,580 - 30,721,590	Zv9	ZFIN_Zv9
gli1_unspecified	6		GRCz11	OTHER_MAPPING	ZFIN Curated Data
la028128Tg	6		GRCz11	OTHER_MAPPING	ZFIN Curated Data
sa8554	6		GRCz11	OTHER_MAPPING	ZFIN Curated Data
te370a	6		GRCz11	OTHER_MAPPING	ZFIN Curated Data
tm276b	6		GRCz11	OTHER_MAPPING	ZFIN Curated Data
ts269	6		GRCz11	OTHER_MAPPING	ZFIN Curated Data
zko599a	6		GRCz11	OTHER_MAPPING	ZFIN Curated Data

GENETIC MAPPING PANELS
Chr	Location	Mapped As	Panel	Mapped By	Scoring
6	154.0 cM	gli1	Heat Shock (HS)	Woods, Ian G.	Data

Note: Physical map location as displayed in the genome browsers is more precise than linkage map location. Note: Physical map location should be used whenever possible.

MAPPING FROM PUBLICATIONS
Marker	Type	Chr	Publication / Person	Comments
z3581	SSLP	6	Karlstrom et al., 2003	Karlstrom et al. (2003) used centromere linkage analysis to map the detour (dtr) locus to the gli1 gene on Linkage Group 6.
z4910	SSLP	6	Karlstrom et al., 2003	Karlstrom et al. (2003) used centromere linkage analysis to map the detour (dtr) locus to the gli1 gene on Linkage Group 6.
z4950	SSLP	6	Karlstrom et al., 2003	Karlstrom et al. (2003) used centromere linkage analysis to map the detour (dtr) locus to the gli1 gene on Linkage Group 6.
ts269	Feature	6	Karlstrom et al., 2003	Karlstrom et al. (2003) used centromere linkage analysis to map the detour (dtr) locus to the gli1 gene on Linkage Group 6.

Chr 6

Karlstrom et al. (2003) used centromere linkage analysis to map the detour (dtr) locus to ...

Genomic Feature tm276b is an allele of gli1

Chr	Location	Mapped As	Panel	Mapped By	Scoring
6	85.3 cM	tm276b	Boston MGH Cross (MGH)	Geisler, Robert	Data

Note: Physical map location as displayed in the genome browsers is more precise than linkage map location. Note: Physical map location should be used whenever possible.

Genomic Feature ts269 is an allele of gli1

Marker	Type	Chr	Publication / Person	Comments
gli1	GENE	6	Karlstrom et al., 2003	Karlstrom et al. (2003) used centromere linkage analysis to map the detour (dtr) locus to the gli1 gene on Linkage Group 6.
z3581	SSLP	6	Karlstrom et al., 2003	Karlstrom et al. (2003) used centromere linkage analysis to map the detour (dtr) locus to the gli1 gene on Linkage Group 6.
z4910	SSLP	6	Karlstrom et al., 2003	Karlstrom et al. (2003) used centromere linkage analysis to map the detour (dtr) locus to the gli1 gene on Linkage Group 6.
z4950	SSLP	6	Karlstrom et al., 2003	Karlstrom et al. (2003) used centromere linkage analysis to map the detour (dtr) locus to the gli1 gene on Linkage Group 6.

Genomic Feature ts269 is an allele of gli1

Chr 6

Karlstrom et al. (2003) used centromere linkage analysis to map the detour (dtr) locus to ...

Genomic Feature sa32697 is an allele of gli1