ZFIN ID: ZDB-GENE-030321-1

Mapping Details

Gene Name: GLI family zinc finger 1
Symbol: gli1
PHYSICAL MAP AND BROWSER
Genome Browser Chr Position Assembly
ZFIN 6 61,993,980 - 62,080,824 GRCz12tu
NCBI Map Viewer 6 61,993,980 - 62,080,824 GRCz12tu
NCBI Map Viewer 6 59,426,148 - 59,505,589 GRCz11
PHYSICAL MAPPING
Feature Chr Position Assembly Source DetailedSource Citations
sa8554 6 59,439,991 GRCz11 DIRECT Busch-Nentwich et al., 2013
6 59,444,779 GRCz10 DIRECT Busch-Nentwich et al., 2013
1 30,733,084 Zv9 DIRECT Busch-Nentwich et al., 2013
sa31210 6 61,997,492 GRCz12tu DIRECT Sealy et al., 2025
6 59,429,619 GRCz11 DIRECT Busch-Nentwich et al., 2013
6 59,434,407 GRCz10 DIRECT Busch-Nentwich et al., 2013
1 30,743,456 Zv9 DIRECT Busch-Nentwich et al., 2013
sa32697 6 61,997,220 GRCz12tu DIRECT Sealy et al., 2025
6 59,429,344 GRCz11 DIRECT Busch-Nentwich et al., 2013
6 59,434,132 GRCz10 DIRECT Busch-Nentwich et al., 2013
1 30,743,731 Zv9 DIRECT Busch-Nentwich et al., 2013
sa38271 6 62,000,673 GRCz12tu DIRECT Sealy et al., 2025
6 59,432,800 GRCz11 DIRECT Busch-Nentwich et al., 2013
6 59,437,588 GRCz10 DIRECT Busch-Nentwich et al., 2013
1 30,740,275 Zv9 DIRECT Busch-Nentwich et al., 2013
la028128Tg 1 30,721,580 - 30,721,590 Zv9 ZFIN_Zv9 BurgessLin
ts269 6 GRCz11 GENERAL_LOAD load data [singleton]
gli1_unspecified 6 GRCz11 OTHER_MAPPING Feature location obtained from related gene that has mapped_marker info
6 GRCz11 OTHER_MAPPING featureLocationPullThruFromGenePaneledMarkers
6 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneLinkage
6 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
la028128Tg 6 GRCz11 OTHER_MAPPING featureLocationPullThruFromGenePaneledMarkers
6 GRCz11 OTHER_MAPPING Feature location obtained from related gene that has mapped_marker info
6 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
6 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneLinkage
sa8554 6 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
6 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneLinkage
6 GRCz11 OTHER_MAPPING Feature location obtained from related gene that has mapped_marker info
6 GRCz11 OTHER_MAPPING featureLocationPullThruFromGenePaneledMarkers
sa31210 6 GRCz11 OTHER_MAPPING featureLocationPullThruFromGenePaneledMarkers
6 GRCz11 OTHER_MAPPING Feature location obtained from related gene that has mapped_marker info
6 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
6 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneLinkage
sa32697 6 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneLinkage
6 GRCz11 OTHER_MAPPING Feature location obtained from related gene that has mapped_marker info
6 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
6 GRCz11 OTHER_MAPPING featureLocationPullThruFromGenePaneledMarkers
sa38271 6 GRCz11 OTHER_MAPPING Feature location obtained from related gene that has mapped_marker info
6 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
6 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneLinkage
6 GRCz11 OTHER_MAPPING featureLocationPullThruFromGenePaneledMarkers
te370a 6 GRCz11 OTHER_MAPPING featureLocationPullThruFromGenePaneledMarkers
6 GRCz11 OTHER_MAPPING Feature location obtained from related gene that has mapped_marker info
6 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
6 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneLinkage
tm276b 6 GRCz11 OTHER_MAPPING Feature location obtained from related gene that has mapped_marker info
6 GRCz11 OTHER_MAPPING paneledMarkersDirect
6 GRCz11 OTHER_MAPPING directMappedMarker
6 GRCz11 OTHER_MAPPING featureLocationPullThruFromGenePaneledMarkers
6 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneLinkage
6 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
ts269 6 GRCz11 OTHER_MAPPING linkagesDirectMem2
6 GRCz11 OTHER_MAPPING linkagesDirectMem1
6 GRCz11 OTHER_MAPPING featureLocationPullThruFromGenePaneledMarkers
6 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneLinkage
6 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
6 GRCz11 OTHER_MAPPING Feature location obtained from related gene that has mapped_marker info
zko599a 6 GRCz11 OTHER_MAPPING featureLocationPullThruFromGenePaneledMarkers
6 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneLinkage
6 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
6 GRCz11 OTHER_MAPPING Feature location obtained from related gene that has mapped_marker info

GENETIC MAPPING PANELS
Chr Location Mapped As Panel Mapped By Scoring
6 154.0 cM gli1 Heat Shock (HS) Woods, Ian G. Data
Note: Physical map location as displayed in the genome browsers is more precise than linkage map location.
Physical map location should be used whenever possible.
MAPPING FROM PUBLICATIONS
Marker Type Chr Distance Publication / Person Comments
z3581 SSLP 6 Karlstrom et al., 2003 Karlstrom et al. (2003) used centromere linkage analysis to map the detour (dtr) locus to the gli1 gene on Linkage Group 6.
z4910 SSLP 6 Karlstrom et al., 2003 Karlstrom et al. (2003) used centromere linkage analysis to map the detour (dtr) locus to the gli1 gene on Linkage Group 6.
z4950 SSLP 6 Karlstrom et al., 2003 Karlstrom et al. (2003) used centromere linkage analysis to map the detour (dtr) locus to the gli1 gene on Linkage Group 6.
ts269 Feature 6 Karlstrom et al., 2003 Karlstrom et al. (2003) used centromere linkage analysis to map the detour (dtr) locus to the gli1 gene on Linkage Group 6.

OTHER MAPPING INFORMATION
Chr 6 Karlstrom et al., 2003 Karlstrom et al. (2003) used centromere linkage analysis to map the detour (dtr) locus to  ...
Genomic Feature tm276b is an allele of gli1
Chr Location Mapped As Panel Mapped By Scoring
6 85.3 cM tm276b Boston MGH Cross (MGH) Geisler, Robert Data
Note: Physical map location as displayed in the genome browsers is more precise than linkage map location.
Physical map location should be used whenever possible.
Genomic Feature ts269 is an allele of gli1
Marker Type Chr Distance Publication / Person Comments
gli1 GENE 6 Karlstrom et al., 2003 Karlstrom et al. (2003) used centromere linkage analysis to map the detour (dtr) locus to the gli1 gene on Linkage Group 6.
z3581 SSLP 6 Karlstrom et al., 2003 Karlstrom et al. (2003) used centromere linkage analysis to map the detour (dtr) locus to the gli1 gene on Linkage Group 6.
z4910 SSLP 6 Karlstrom et al., 2003 Karlstrom et al. (2003) used centromere linkage analysis to map the detour (dtr) locus to the gli1 gene on Linkage Group 6.
z4950 SSLP 6 Karlstrom et al., 2003 Karlstrom et al. (2003) used centromere linkage analysis to map the detour (dtr) locus to the gli1 gene on Linkage Group 6.
Genomic Feature ts269 is an allele of gli1
Chr 6 Karlstrom et al., 2003 Karlstrom et al. (2003) used centromere linkage analysis to map the detour (dtr) locus to  ...
Genomic Feature sa32697 is an allele of gli1
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