ZFIN ID: ZDB-GENE-030616-3

Mapping Details

Gene Name: protocadherin-related 15a
Symbol: pcdh15a
PHYSICAL MAP AND BROWSER
Genome Assembly: GRCz12tuChromosome: 13
Genome Browser Chr Position Assembly
ZFIN 13 44,646,509 - 45,406,370 GRCz12tu
NCBI Map Viewer 13 44,646,509 - 45,406,370 GRCz12tu
Ensembl 13 41,170,686 - 41,546,779 GRCz11
NCBI Map Viewer 13 41,122,537 - 41,546,779 GRCz11
UCSC 13 - GRCz11
UCSC 13 - GRCz11
Vega 13 41,044,796 - 41,420,889 GRCv10
Mapped Clones containing pcdh15a
CH211-151G17 Chr: 13 Details
DKEY-274K7 Chr: 13 Details
CH73-176C21 Chr: 13 Details
CH73-54D9 Chr: 13 Details
XX-BAC7CSE Unmapped
CH73-283N9 Chr: 13 Details
XX-BAC6CSE Unmapped
CH211-170I2 Chr: 13 Details
DKEY-257M21 Chr: 13 Details
CH73-182C23 Chr: 13 Details
PHYSICAL MAPPING
Feature Chr Position Assembly Source DetailedSource Citations
psi7 13 41,367,108 GRCz11 DIRECT Maeda et al., 2014
sa483 13 44,875,215 GRCz12tu DIRECT Sealy et al., 2025
13 41,351,814 GRCz11 DIRECT Busch-Nentwich et al., 2013
13 41,225,924 GRCz10 DIRECT Busch-Nentwich et al., 2013
13 41,963,872 Zv9 DIRECT Busch-Nentwich et al., 2013
sa1509 13 44,693,969 GRCz12tu DIRECT Sealy et al., 2025
13 41,172,047 GRCz11 DIRECT Busch-Nentwich et al., 2013
13 41,046,157 GRCz10 DIRECT Busch-Nentwich et al., 2013
13 41,784,105 Zv9 DIRECT Busch-Nentwich et al., 2013
sa2682 13 44,843,054 GRCz12tu DIRECT Sealy et al., 2025
13 41,319,790 GRCz11 DIRECT Busch-Nentwich et al., 2013
13 41,193,900 GRCz10 DIRECT Busch-Nentwich et al., 2013
13 41,931,848 Zv9 DIRECT Busch-Nentwich et al., 2013
sa5868 13 44,694,101 GRCz12tu DIRECT Sealy et al., 2025
13 41,172,179 GRCz11 DIRECT Busch-Nentwich et al., 2013
13 41,046,289 GRCz10 DIRECT Busch-Nentwich et al., 2013
13 41,784,237 Zv9 DIRECT Busch-Nentwich et al., 2013
sa13589 13 44,778,536 GRCz12tu DIRECT Sealy et al., 2025
13 41,255,268 GRCz11 DIRECT Busch-Nentwich et al., 2013
13 41,129,378 GRCz10 DIRECT Busch-Nentwich et al., 2013
13 41,867,326 Zv9 DIRECT Busch-Nentwich et al., 2013
sa19068 13 44,966,266 GRCz12tu DIRECT Sealy et al., 2025
13 41,441,151 GRCz11 DIRECT Busch-Nentwich et al., 2013
13 41,315,261 GRCz10 DIRECT Busch-Nentwich et al., 2013
13 42,093,645 Zv9 DIRECT Busch-Nentwich et al., 2013
sa22367 13 44,737,135 GRCz12tu DIRECT Sealy et al., 2025
13 41,214,805 GRCz11 DIRECT Busch-Nentwich et al., 2013
13 41,088,915 GRCz10 DIRECT Busch-Nentwich et al., 2013
13 41,826,863 Zv9 DIRECT Busch-Nentwich et al., 2013
sa35571 13 44,693,747 GRCz12tu DIRECT Sealy et al., 2025
13 41,171,825 GRCz11 DIRECT Busch-Nentwich et al., 2013
13 41,045,935 GRCz10 DIRECT Busch-Nentwich et al., 2013
13 41,783,883 Zv9 DIRECT Busch-Nentwich et al., 2013
sa42279 13 44,890,993 GRCz12tu DIRECT Sealy et al., 2025
13 41,367,151 GRCz11 DIRECT Busch-Nentwich et al., 2013
13 41,241,261 GRCz10 DIRECT Busch-Nentwich et al., 2013
13 41,979,209 Zv9 DIRECT Busch-Nentwich et al., 2013
la012402Tg 13 42,026,056 - 42,026,066 Zv9 ZFIN_Zv9 BurgessLin
la018628Tg 13 41,988,810 - 41,988,820 Zv9 ZFIN_Zv9 BurgessLin
th263b 13 GRCz11 GENERAL_LOAD load data [singleton]
la012402Tg 13 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
la018628Tg 13 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
psi7 13 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
sa483 13 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
sa1509 13 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
sa2682 13 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
sa5868 13 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
sa13589 13 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
sa19068 13 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
sa22367 13 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
sa35571 13 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
sa42279 13 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
t288 13 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
t23281 13 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
t25708 13 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
tc256e 13 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
th263b 13 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
13 GRCz11 OTHER_MAPPING linkagesDirectMem1
13 GRCz11 OTHER_MAPPING linkagesDirectMem2

GENETIC MAPPING PANELS: No data available

OTHER MAPPING INFORMATION
Genomic Feature th263b is an allele of pcdh15a
Marker Type Chr Distance Publication / Person Comments
z25253 SSLP 13 Seiler et al., 2005 Seiler, et al. (2005. Development 132:615-623) reports mapping the th263b  ...
z26404 SSLP 13 Seiler et al., 2005 Seiler, et al. (2005. Development 132:615-623) reports mapping the th263b  ...
Genomic Feature th263b is an allele of pcdh15a
Chr 13 Seiler et al., 2005 Seiler, et al. (2005. Development 132:615-623) reports mapping the th263b allele of orbiter to LG  ...
Genomic Feature psi7 is an allele of pcdh15a
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