ZFIN ID: ZDB-GENE-990715-2

Mapping Details

Gene Name: sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3D
Symbol: sema3d
PHYSICAL MAP AND BROWSER
Genome Browser Chr Position Assembly
ZFIN 18 10,399,534 - 10,466,921 GRCz12tu
NCBI Map Viewer 18 10,399,534 - 10,466,921 GRCz12tu
Ensembl 18 9,171,778 - 9,238,675 GRCz11
NCBI Map Viewer 18 9,171,778 - 9,238,675 GRCz11
UCSC 18 - GRCz11
Vega 18 9,213,759 - 9,280,656 GRCv10
Mapped Clones containing sema3d
CH73-91H12 Chr: 18 Details
CH1073-181J18 Chr: 18 Details
CH1073-455M18 Chr: 18 Details
PHYSICAL MAPPING
Feature Chr Position Assembly Source DetailedSource Citations
mu268 18 9,186,447 - 9,186,460 GRCz11 DIRECT Hamm et al., 2016
sa1661 18 10,440,875 GRCz12tu DIRECT Sealy et al., 2025
18 9,212,625 GRCz11 DIRECT Busch-Nentwich et al., 2013
18 9,254,606 GRCz10 DIRECT Busch-Nentwich et al., 2013
18 8,677,228 Zv9 DIRECT Busch-Nentwich et al., 2013
sa15069 18 10,457,428 GRCz12tu DIRECT Sealy et al., 2025
18 9,271,159 GRCz10 DIRECT Busch-Nentwich et al., 2013
18 8,693,781 Zv9 DIRECT Busch-Nentwich et al., 2013
sa19196 18 10,414,775 GRCz12tu DIRECT Sealy et al., 2025
18 9,186,525 GRCz11 DIRECT Busch-Nentwich et al., 2013
18 9,228,506 GRCz10 DIRECT Busch-Nentwich et al., 2013
18 8,651,128 Zv9 DIRECT Busch-Nentwich et al., 2013
sa28980 18 10,440,978 GRCz12tu DIRECT Sealy et al., 2025
18 9,212,728 GRCz11 DIRECT Busch-Nentwich et al., 2013
18 9,254,709 GRCz10 DIRECT Busch-Nentwich et al., 2013
18 8,677,331 Zv9 DIRECT Busch-Nentwich et al., 2013
sa30702 18 10,414,695 GRCz12tu DIRECT Sealy et al., 2025
18 9,186,445 GRCz11 DIRECT Busch-Nentwich et al., 2013
18 9,228,426 GRCz10 DIRECT Busch-Nentwich et al., 2013
18 8,651,048 Zv9 DIRECT Busch-Nentwich et al., 2013
sa36576 18 10,414,683 GRCz12tu DIRECT Sealy et al., 2025
18 9,186,433 GRCz11 DIRECT Busch-Nentwich et al., 2013
18 9,228,414 GRCz10 DIRECT Busch-Nentwich et al., 2013
18 8,651,036 Zv9 DIRECT Busch-Nentwich et al., 2013
sa43051 18 10,444,607 GRCz12tu DIRECT Sealy et al., 2025
18 9,216,357 GRCz11 DIRECT Busch-Nentwich et al., 2013
18 9,258,338 GRCz10 DIRECT Busch-Nentwich et al., 2013
18 8,680,960 Zv9 DIRECT Busch-Nentwich et al., 2013
sa44882 18 10,457,293 GRCz12tu DIRECT Sealy et al., 2025
18 9,229,043 GRCz11 DIRECT Busch-Nentwich et al., 2013
18 9,271,024 GRCz10 DIRECT Busch-Nentwich et al., 2013
18 8,693,646 Zv9 DIRECT Busch-Nentwich et al., 2013
la020551Tg 18 8,674,276 - 8,674,286 Zv9 ZFIN_Zv9 BurgessLin
18 GRCz11 OTHER_MAPPING featureLocationPullThruFromGenePaneledMarkers
18 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
18 GRCz11 OTHER_MAPPING Feature location obtained from related gene that has mapped_marker info
mu268 18 GRCz11 OTHER_MAPPING featureLocationPullThruFromGenePaneledMarkers
18 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
18 GRCz11 OTHER_MAPPING Feature location obtained from related gene that has mapped_marker info
sa1661 18 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
18 GRCz11 OTHER_MAPPING featureLocationPullThruFromGenePaneledMarkers
18 GRCz11 OTHER_MAPPING Feature location obtained from related gene that has mapped_marker info
sa15069 18 GRCz11 OTHER_MAPPING Feature location obtained from related gene that has mapped_marker info
18 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
18 GRCz11 OTHER_MAPPING featureLocationPullThruFromGenePaneledMarkers
sa19196 18 GRCz11 OTHER_MAPPING Feature location obtained from related gene that has mapped_marker info
18 GRCz11 OTHER_MAPPING featureLocationPullThruFromGenePaneledMarkers
18 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
sa28980 18 GRCz11 OTHER_MAPPING Feature location obtained from related gene that has mapped_marker info
18 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
18 GRCz11 OTHER_MAPPING featureLocationPullThruFromGenePaneledMarkers
sa30702 18 GRCz11 OTHER_MAPPING featureLocationPullThruFromGenePaneledMarkers
18 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
18 GRCz11 OTHER_MAPPING Feature location obtained from related gene that has mapped_marker info
sa36576 18 GRCz11 OTHER_MAPPING Feature location obtained from related gene that has mapped_marker info
18 GRCz11 OTHER_MAPPING featureLocationPullThruFromGenePaneledMarkers
18 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
sa43051 18 GRCz11 OTHER_MAPPING featureLocationPullThruFromGenePaneledMarkers
18 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
18 GRCz11 OTHER_MAPPING Feature location obtained from related gene that has mapped_marker info
sa44882 18 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
18 GRCz11 OTHER_MAPPING Feature location obtained from related gene that has mapped_marker info
18 GRCz11 OTHER_MAPPING featureLocationPullThruFromGenePaneledMarkers

GENETIC MAPPING PANELS
Chr Location Mapped As Panel Mapped By Scoring
18 32.3 cM sema3d Heat Shock (HS) Woods, Ian G. Data
Note: Physical map location as displayed in the genome browsers is more precise than linkage map location.
Physical map location should be used whenever possible.

OTHER MAPPING INFORMATION: No data available
Genomic Feature sa1661 is an allele of sema3d
Your Input Welcome
We welcome your input and comments. Please use this form to recommend updates to the information in ZFIN. We appreciate as much detail as possible and references as appropriate. We will review your comments promptly.
Please check the highlighted fields and try again.
Thank you for submitting comments. Your input has been emailed to ZFIN curators who may contact you if additional information is required.
Oops. Something went wrong. Please try again later.