ZFIN ID: ZDB-GENE-990706-8

Mapping Details

Gene Name: GLI family zinc finger 2a
Symbol: gli2a
PHYSICAL MAP AND BROWSER
Genome Browser Chr Position Assembly
ZFIN 9 38,852,288 - 39,007,675 GRCz12tu
NCBI Map Viewer 9 38,852,288 - 39,007,675 GRCz12tu
Ensembl 9 37,141,836 - 37,296,908 GRCz11
NCBI Map Viewer 9 37,141,836 - 37,296,908 GRCz11
UCSC 9 - GRCz11
Vega 9 37,332,041 - 37,487,113 GRCv10
Mapped Clones containing gli2a
DKEY-25L23 Chr: 9 Details
CH211-61D13 Chr: 9 Details
PHYSICAL MAPPING
Feature Chr Position Assembly Source DetailedSource Citations
i275 9 37,272,474 - 37,272,485 GRCz11 DIRECT Wang et al., 2013
i276 9 37,272,481 - 37,272,482 GRCz11 DIRECT Wang et al., 2013
sa10919 9 39,005,754 GRCz12tu DIRECT Sealy et al., 2025
9 37,294,987 GRCz11 DIRECT Busch-Nentwich et al., 2013
9 37,485,192 GRCz10 DIRECT Busch-Nentwich et al., 2013
9 38,347,296 Zv9 DIRECT Busch-Nentwich et al., 2013
sa12847 9 39,004,782 GRCz12tu DIRECT Sealy et al., 2025
9 37,294,015 GRCz11 DIRECT Busch-Nentwich et al., 2013
9 37,484,220 GRCz10 DIRECT Busch-Nentwich et al., 2013
9 38,346,324 Zv9 DIRECT Busch-Nentwich et al., 2013
sa15237 9 39,004,928 GRCz12tu DIRECT Sealy et al., 2025
9 37,294,161 GRCz11 DIRECT Busch-Nentwich et al., 2013
9 37,484,366 GRCz10 DIRECT Busch-Nentwich et al., 2013
9 38,346,470 Zv9 DIRECT Busch-Nentwich et al., 2013
sa15798 9 38,966,177 GRCz12tu DIRECT Sealy et al., 2025
9 37,255,490 GRCz11 DIRECT Busch-Nentwich et al., 2013
9 37,445,695 GRCz10 DIRECT Busch-Nentwich et al., 2013
9 38,307,799 Zv9 DIRECT Busch-Nentwich et al., 2013
sa21538 9 38,885,332 GRCz12tu DIRECT Sealy et al., 2025
9 37,174,695 GRCz11 DIRECT Busch-Nentwich et al., 2013
9 37,364,900 GRCz10 DIRECT Busch-Nentwich et al., 2013
9 38,227,004 Zv9 DIRECT Busch-Nentwich et al., 2013
sa21539 9 39,003,778 GRCz12tu DIRECT Sealy et al., 2025
9 37,293,011 GRCz11 DIRECT Busch-Nentwich et al., 2013
9 37,483,216 GRCz10 DIRECT Busch-Nentwich et al., 2013
9 38,345,320 Zv9 DIRECT Busch-Nentwich et al., 2013
sa21540 9 39,006,265 GRCz12tu DIRECT Sealy et al., 2025
9 37,295,498 GRCz11 DIRECT Busch-Nentwich et al., 2013
9 37,485,703 GRCz10 DIRECT Busch-Nentwich et al., 2013
9 38,347,807 Zv9 DIRECT Busch-Nentwich et al., 2013
sa41479 9 39,005,238 GRCz12tu DIRECT Sealy et al., 2025
9 37,294,471 GRCz11 DIRECT Busch-Nentwich et al., 2013
9 37,484,676 GRCz10 DIRECT Busch-Nentwich et al., 2013
9 38,346,780 Zv9 DIRECT Busch-Nentwich et al., 2013
ty17a 9 37,294,312 GRCz11 DIRECT Karlstrom et al., 1999
ty119 9 37,294,015 GRCz11 DIRECT Karlstrom et al., 1999
la016571Tg 9 38,277,120 - 38,277,130 Zv9 ZFIN_Zv9 BurgessLin
ty17a 9 GRCz11 GENERAL_LOAD load data [singleton]
gli2a_unspecified 9 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
9 GRCz11 OTHER_MAPPING Feature location obtained from related gene that has mapped_marker info
9 GRCz11 OTHER_MAPPING featureLocationPullThruFromGenePaneledMarkers
9 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneLinkage
i275 9 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
9 GRCz11 OTHER_MAPPING Feature location obtained from related gene that has mapped_marker info
9 GRCz11 OTHER_MAPPING featureLocationPullThruFromGenePaneledMarkers
9 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneLinkage
i276 9 GRCz11 OTHER_MAPPING featureLocationPullThruFromGenePaneledMarkers
9 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneLinkage
9 GRCz11 OTHER_MAPPING Feature location obtained from related gene that has mapped_marker info
9 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
la016571Tg 9 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
9 GRCz11 OTHER_MAPPING featureLocationPullThruFromGenePaneledMarkers
9 GRCz11 OTHER_MAPPING Feature location obtained from related gene that has mapped_marker info
9 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneLinkage
s406 9 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
9 GRCz11 OTHER_MAPPING Feature location obtained from related gene that has mapped_marker info
9 GRCz11 OTHER_MAPPING featureLocationPullThruFromGenePaneledMarkers
9 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneLinkage
sa10919 9 GRCz11 OTHER_MAPPING Feature location obtained from related gene that has mapped_marker info
9 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
9 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneLinkage
9 GRCz11 OTHER_MAPPING featureLocationPullThruFromGenePaneledMarkers
sa12847 9 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneLinkage
9 GRCz11 OTHER_MAPPING featureLocationPullThruFromGenePaneledMarkers
9 GRCz11 OTHER_MAPPING Feature location obtained from related gene that has mapped_marker info
9 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
sa15237 9 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneLinkage
9 GRCz11 OTHER_MAPPING featureLocationPullThruFromGenePaneledMarkers
9 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
9 GRCz11 OTHER_MAPPING Feature location obtained from related gene that has mapped_marker info
sa15798 9 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneLinkage
9 GRCz11 OTHER_MAPPING featureLocationPullThruFromGenePaneledMarkers
9 GRCz11 OTHER_MAPPING Feature location obtained from related gene that has mapped_marker info
9 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
sa21538 9 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
9 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneLinkage
9 GRCz11 OTHER_MAPPING featureLocationPullThruFromGenePaneledMarkers
9 GRCz11 OTHER_MAPPING Feature location obtained from related gene that has mapped_marker info
sa21539 9 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneLinkage
9 GRCz11 OTHER_MAPPING featureLocationPullThruFromGenePaneledMarkers
9 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
9 GRCz11 OTHER_MAPPING Feature location obtained from related gene that has mapped_marker info
sa21540 9 GRCz11 OTHER_MAPPING featureLocationPullThruFromGenePaneledMarkers
9 GRCz11 OTHER_MAPPING Feature location obtained from related gene that has mapped_marker info
9 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
9 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneLinkage
sa41479 9 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneLinkage
9 GRCz11 OTHER_MAPPING featureLocationPullThruFromGenePaneledMarkers
9 GRCz11 OTHER_MAPPING Feature location obtained from related gene that has mapped_marker info
9 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
ty17a 9 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneLinkage
9 GRCz11 OTHER_MAPPING Feature location obtained from related gene that has mapped_marker info
9 GRCz11 OTHER_MAPPING linkagesDirectMem2
9 GRCz11 OTHER_MAPPING linkagesDirectMem1
9 GRCz11 OTHER_MAPPING featureLocationPullThruFromGenePaneledMarkers
9 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
ty119 9 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
9 GRCz11 OTHER_MAPPING Feature location obtained from related gene that has mapped_marker info
9 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneLinkage
9 GRCz11 OTHER_MAPPING featureLocationPullThruFromGenePaneledMarkers

GENETIC MAPPING PANELS
Chr Location Mapped As Panel Mapped By Scoring
9 72.8 cM gli2 Heat Shock (HS) Woods, Ian G. Data
Note: Physical map location as displayed in the genome browsers is more precise than linkage map location.
Physical map location should be used whenever possible.
MAPPING FROM PUBLICATIONS
Marker Type Chr Distance Publication / Person Comments
slc15a2 GENE 9 Romano et al., 2006 Romano A et al (Physiol. Genomics. 24(3):207-217) mapped the slc15a2 gene to  ...
hspbap1 GENE 9 Romano et al., 2006 Romano A et al (Physiol. Genomics. 24(3):207-217) mapped the slc15a2 gene to  ...

OTHER MAPPING INFORMATION
Chr 9 Romano et al., 2006 Romano A et al (Physiol. Genomics. 24(3):207-217) mapped the slc15a2 gene to LG 9 using BLAST  ...
Markers Encoded by gli2a
fc85b05 Chr: 9 Details
Genomic Feature ty17a is an allele of gli2a
Marker Type Chr Distance Publication / Person Comments
twist2 GENE 9 Karlstrom et al., 1999
z1660 SSLP 9 Karlstrom et al., 1999
z5080 SSLP 9 Karlstrom et al., 1999
z5564 SSLP 9 Karlstrom et al., 1999
Genomic Feature ty17a is an allele of gli2a
Chr 9 Karlstrom et al., 1999
Genomic Feature s406 is an allele of gli2a
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