ZFIN ID: ZDB-GENE-030131-2193

ZFIN ID: ZDB-GENE-030131-2193

Mapping Details

Gene Name:	PR domain containing 1a, with ZNF domain
Symbol:	prdm1a

PHYSICAL MAP AND BROWSER

Genome Browser	Chr	Position	Assembly
ZFIN	16	7,763,667 - 7,776,041	GRCz12tu
NCBI Map Viewer	16	7,763,667 - 7,776,041	GRCz12tu
Ensembl	16	7,430,998 - 7,443,388	GRCz11
NCBI Map Viewer	16	7,430,998 - 7,443,372	GRCz11
UCSC	16	-	GRCz11
Vega	16	7,513,652 - 7,526,042	GRCv10

Mapped Clones containing prdm1a
DKEY-11F5	Chr: 16 Details

PHYSICAL MAPPING

Feature	Chr	Position	Assembly	Source	DetailedSource	Citations
sa6407	16	7,765,368	GRCz12tu	DIRECT		Sealy et al., 2025
	16	7,432,699	GRCz11	DIRECT		Busch-Nentwich et al., 2013
	16	7,515,353	GRCz10	DIRECT		Busch-Nentwich et al., 2013
	16	8,652,099	Zv9	DIRECT		Busch-Nentwich et al., 2013
sa9796	16	7,770,183	GRCz12tu	DIRECT		Sealy et al., 2025
	16	7,437,514	GRCz11	DIRECT		Busch-Nentwich et al., 2013
	16	7,520,168	GRCz10	DIRECT		Busch-Nentwich et al., 2013
	16	8,656,914	Zv9	DIRECT		Busch-Nentwich et al., 2013
sa22750	16	7,765,038	GRCz12tu	DIRECT		Sealy et al., 2025
	16	7,432,369	GRCz11	DIRECT		Busch-Nentwich et al., 2013
	16	7,515,023	GRCz10	DIRECT		Busch-Nentwich et al., 2013
	16	8,651,769	Zv9	DIRECT		Busch-Nentwich et al., 2013
m805	16		GRCz11	GENERAL_LOAD	load data [singleton]
	16		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGenePaneledMarkers
	16		GRCz11	OTHER_MAPPING	linkagesDirectMem2
	16		GRCz11	OTHER_MAPPING	linkagesDirectMem1
	16		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGeneGBrowse
nl3	16		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGeneGBrowse
	16		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGenePaneledMarkers
prdm1a_unspecified	16		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGenePaneledMarkers
	16		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGeneGBrowse
sa6407	16		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGenePaneledMarkers
	16		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGeneGBrowse
sa9796	16		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGenePaneledMarkers
	16		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGeneGBrowse
sa22750	16		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGenePaneledMarkers
	16		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGeneGBrowse
tp39	16		GRCz11	OTHER_MAPPING	linkagesDirectMem2
	16		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGenePaneledMarkers
	16		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGeneGBrowse
	16		GRCz11	OTHER_MAPPING	directMappedMarker
	16		GRCz11	OTHER_MAPPING	paneledMarkersDirect
	16		GRCz11	OTHER_MAPPING	linkagesDirectMem1

GENETIC MAPPING PANELS: No data available

Markers Encoded by prdm1a
fb99c12 Chr: 16 Details

Genomic Feature tp39 is an allele of prdm1a

Chr	Location	Mapped As	Panel	Mapped By	Scoring
16	24.2 cM	tp39	Boston MGH Cross (MGH)	Geisler, Robert	Data

Note: Physical map location as displayed in the genome browsers is more precise than linkage map location. Note: Physical map location should be used whenever possible.

Genomic Feature tp39 is an allele of prdm1a

Marker	Type	Chr	Distance	Publication / Person	Comments
z6329	SSLP	16	0.42 cM	Baxendale et al., 2004	Baxendale et al. Nat. Gen. 36(1):88-93 (2004) mapped the ubo locus to a 1.1 cM ...
z19602	SSLP	16	0.65 cM	Baxendale et al., 2004	Baxendale et al. Nat. Gen. 36(1):88-93 (2004) mapped the ubo locus to a 1.1 cM ...
z6365	SSLP	16		Baxendale et al., 2004	Baxendale et al. Nat. Gen. 36(1):88-93 (2004) mapped the ubo locus to a 1.1 cM ...

Genomic Feature m805 is an allele of prdm1a

Marker	Type	Chr	Distance	Publication / Person	Comments
z19602	SSLP	16		Hernandez-Lagunas et al., 2005
z6365	SSLP	16		Hernandez-Lagunas et al., 2005

Genomic Feature m805 is an allele of prdm1a

Chr 16

Hernandez-Lagunas et al., 2005

Genomic Feature prdm1a_unspecified is an allele of prdm1a