Genomic Feature

hg139

ID
ZDB-ALT-220329-6
Name
hg139
Synonyms
None
Affected Genomic Region
Construct
None
Type
Allele with one delins (1)
Protocol
embryos treated with
Lab of Origin
Burgess Lab
Current Source
Other Pages
Notes
No data available
Genome Browser
Variants
Variant Type
Delins
Variant Location
Chr 22: 37350553 - 37353156 (GRCz11) (1) Details
Nucleotide change
ACGCAGGCGCACGAATTTAAAAGGTGTCATTTTAAAAACACTCGTTCTTGAGACATTATCCCAACTAACATGCCTGTATTTATGCCACTACACTTCAACCGGCTCAAGCTGAATGTGAATTAGAAAATGGAGGCCCGTCAATCATCACAAATAGGTAGTTTTGTTTCGGCTGTTGTCATTACATCACTCTGAACAAAAGCACGACAAAAGCCGACTACACTGACCATCTGAGTTGTAAGGATTTGTGTTATTAGGATTCACTCCATGAAGAGTGACAGGGGGAGAGGGTTTATTCAGCACAGCCTCCTTCAAAATAACAAGAGCACGGGCGCTTTGATTAAATCCAATTATTTGTATAATAACTAAAAACACAAGGAGCTATTTTTTGCCCAACACATCTATTCTCCGAGAATTACGATTAAAAGCTGATCATTCTTCCTGCAGAAGTTGACTTTACTCGACAAGAGTGGAACTAATATACAAACAGGCTTAATGTCAGGAGGAAAAAATGCCTATTTTATATTTTTCTTTTCCACGAAAGCATGTTTTATGTTTCAACAGCGTCCTCTTGCGGTCACACTGATACAAACTCGTGCTCCCTCAACATTTTCCACATGCACGCAGTTATTTTGGATTGCTTTATAAATAAGTTTTAGTCGCTGTACTTTTTATATAATTAGCGGGAGATAAAAAATAATAATTACACAAAACAAACAACATAAATTCCAACAATAATACTTATTTTTTTAGGGTTGCATGCATGAATAAATAAACACTCTCTCAGCGTCGTTTTAAACTTGTAAATCGACTAACAACGTGAGAATTTCAACACGACGGCAATGCAGCATGCGCCTTTATAATGCAAGTCTAAACTGCGCGCTCTCGATCTGCATTTGAGTGCCTTAATCTGCTTATGGAAATGTGTAGAACAGCGGGGAATCTCTAACATCCCAGAGTGGCTCCTGCTTTGGCTAAATTGTTAATTGTCACAGTTCTTCACAATAGGTGTATCAGCTCCTGAAAAGATTCTTAATATTAAACTAAAATATATATATGTAACAACTAATTTTATATATGCAAAAAAAAAATGTTTTTAACAAACATAAATTAACAGGCACGATAAAACAAATGTAACAAACAAAGATTTGGCATGTAAGAAAAATTATTCGTATTTTATAATATATGTCATTTATATATATATTTTTTTATCAACACATTTTTTAAACTAAAGCGATATAATAAACGAATAAATTAAAATAACTAGCCTACAACAAAAAAGAAATGTGTCATTCACCCGTGCCCTCATGTTTGCGCTCAATAATTAAACGCAAATTCAGCGGCGCATCTTTACCTATATATGCATTTATAAATTAGCTCGAGAATTACACAAAACCTTCTTTATAATTATTCAAGCATTTAATCCTAAAATTGGGAGATACAAATTACTACATATTAAGAGTGAGACGGGGGATAAAGGGGAAAGACATGGAGATGTGTCCACTAGGGGCCGCACTGACTGCAGATCAAAATTTGACTCATAACCCATTTCATACAGGCTGCTTCTGAAAAATGATAACGGTTTCCACTTTATTTAGATGTTTTTAACAGTAATATATAAAAATAGCGAAGACTGGATTAGCATTTTTTATCATTAAAACAAAATAGCGAATTTAGCAATTATATAAAAAGTTAGACATAATTTAAAACAAGCCTGTCATTTTGACATTTCTAATTATTATTAATCTTTGTAATAAACGCCGCTTTAAAATTATAATTCGCATACATTTTAAGCACATTTGTGCGTATTAATTGCACTTAATTTCAACTCGTTTTAATTAATATCATCAAAGTAAGTAAATGTGAAAAACAAACGTTAGTTTGTTTGTATTTTCCAAAGTTTGCCAAACAGCCGCGAACACTCAACAAGTACGATTTTTACTATAGTACATGCATCCAATAAAACCAATAACATACAGGCTAGTGGATCGCTTGAATAAATAATGCAACTTCCAAAGTTTTAATATCAAATCAACCCCACGCTGTTTACATCTCTAATTAAATCCAGTCCCAGCAGACAGACACGCACAAACGAGCCGCACACCCAAAAGTTACTCACACTCACTTTGACTGACACATCCAAAAGTTCCCCGCGCCTGCCGGCCGGATCCTCCCATGCGCGCCCAGCGAGGAGTCGCTTTTTCCGGCCGCGCAGTTTTCCGGCAGCCGCTCTCATGATCCATAGCGTCCAGTCGCTCCGTGTGCCCGCTCAGAGTGCTCTCAGCGCGGCTGCTCTCACCCGCCTCAGCCCCTCTGCAGCTCCACGCCATCTGAAAAGGGGCCGATTGAAAAAGAAGAAGAATGCATCAAGAACAACAAAAGTCACTTATAGCAAGTCTACAAAAACCCCCACCAAACATAATGAGAAGGAGAAAGCTTTATATTTTTTCACCGGGTATTCAGAGATAATTTGAAGCCATTGTTTCTGGCACAGATGGCTCTTTTTAATACAATAACACTGTGAGCTCCACCAACAATAAAAATCTAAAGCCTTCTCCTGAATAACAGTTTTTTGTTCGCTCTTGTAAAGGGCCAACAAAAGCAGTC/ATTTATTGTT
Variant Notes
Deletion 2594 bp that is -1955 bp (upstream the TSS) of sox2
Effect on DNA/cDNA, transcript, protein (from publications)
DNA/cDNA Change
10 bp inserted / 2601 bp deleted in 5' UTR (1)
Transcript Consequence
None
Protein Consequence
None
Sequences
Flanking Sequence
GCTGACCAATCAGAGCGCGTCTGCTCCCTCGGTTTGCATAAAGGGGCGGGGTTACGGACGGTCAGCAGTGCAGCGCAGAGCCACAGGCAGTGGCTGTGAGTGTGTGTGTGTGTGTGTGTGTTTATGAGAGAGCTAAAGTGAGAATATTTCACACAAACCATTTTCCAATCAAACTCTGTATGATCTTAAGATTCTAAATAAACATTTAAAGTTTTATTATTAGTATTATTATTATTATTATTATTATTATTATTATTATTATTACTATTATTATTTATCGCTTTGTTTTTAGTGTAAGTTTGCGTATTCAACACATCAGTTAAACTCTTAAAGCACTGAAAATAAAATAAAGATTTTTTTAAGTTAAAACGGCAAGCTCATAATATTAAAAACTTCCAAAATAATGCGTGAATAAGCCGAATAAAATATAGCTATTTATTATTTAGTTCGCATTTAAAAATGAGCAGCGGCTTGTTTTATTAACGAATACAATAAAGTAA
ACGCAGGCGCACGAATTTAAAAGGTGTCATTTTAAAAACACTCGTTCTTGAGACATTATCCCAACTAACATGCCTGTATTTATGCCACTACACTTCAACCGGCTCAAGCTGAATGTGAATTAGAAAATGGAGGCCCGTCAATCATCACAAATAGGTAGTTTTGTTTCGGCTGTTGTCATTACATCACTCTGAACAAAAGCACGACAAAAGCCGACTACACTGACCATCTGAGTTGTAAGGATTTGTGTTATTAGGATTCACTCCATGAAGAGTGACAGGGGGAGAGGGTTTATTCAGCACAGCCTCCTTCAAAATAACAAGAGCACGGGCGCTTTGATTAAATCCAATTATTTGTATAATAACTAAAAACACAAGGAGCTATTTTTTGCCCAACACATCTATTCTCCGAGAATTACGATTAAAAGCTGATCATTCTTCCTGCAGAAGTTGACTTTACTCGACAAGAGTGGAACTAATATACAAACAGGCTTAATGTCAGGAGGAAAAAATGCCTATTTTATATTTTTCTTTTCCACGAAAGCATGTTTTATGTTTCAACAGCGTCCTCTTGCGGTCACACTGATACAAACTCGTGCTCCCTCAACATTTTCCACATGCACGCAGTTATTTTGGATTGCTTTATAAATAAGTTTTAGTCGCTGTACTTTTTATATAATTAGCGGGAGATAAAAAATAATAATTACACAAAACAAACAACATAAATTCCAACAATAATACTTATTTTTTTAGGGTTGCATGCATGAATAAATAAACACTCTCTCAGCGTCGTTTTAAACTTGTAAATCGACTAACAACGTGAGAATTTCAACACGACGGCAATGCAGCATGCGCCTTTATAATGCAAGTCTAAACTGCGCGCTCTCGATCTGCATTTGAGTGCCTTAATCTGCTTATGGAAATGTGTAGAACAGCGGGGAATCTCTAACATCCCAGAGTGGCTCCTGCTTTGGCTAAATTGTTAATTGTCACAGTTCTTCACAATAGGTGTATCAGCTCCTGAAAAGATTCTTAATATTAAACTAAAATATATATATGTAACAACTAATTTTATATATGCAAAAAAAAAATGTTTTTAACAAACATAAATTAACAGGCACGATAAAACAAATGTAACAAACAAAGATTTGGCATGTAAGAAAAATTATTCGTATTTTATAATATATGTCATTTATATATATATTTTTTTATCAACACATTTTTTAAACTAAAGCGATATAATAAACGAATAAATTAAAATAACTAGCCTACAACAAAAAAGAAATGTGTCATTCACCCGTGCCCTCATGTTTGCGCTCAATAATTAAACGCAAATTCAGCGGCGCATCTTTACCTATATATGCATTTATAAATTAGCTCGAGAATTACACAAAACCTTCTTTATAATTATTCAAGCATTTAATCCTAAAATTGGGAGATACAAATTACTACATATTAAGAGTGAGACGGGGGATAAAGGGGAAAGACATGGAGATGTGTCCACTAGGGGCCGCACTGACTGCAGATCAAAATTTGACTCATAACCCATTTCATACAGGCTGCTTCTGAAAAATGATAACGGTTTCCACTTTATTTAGATGTTTTTAACAGTAATATATAAAAATAGCGAAGACTGGATTAGCATTTTTTATCATTAAAACAAAATAGCGAATTTAGCAATTATATAAAAAGTTAGACATAATTTAAAACAAGCCTGTCATTTTGACATTTCTAATTATTATTAATCTTTGTAATAAACGCCGCTTTAAAATTATAATTCGCATACATTTTAAGCACATTTGTGCGTATTAATTGCACTTAATTTCAACTCGTTTTAATTAATATCATCAAAGTAAGTAAATGTGAAAAACAAACGTTAGTTTGTTTGTATTTTCCAAAGTTTGCCAAACAGCCGCGAACACTCAACAAGTACGATTTTTACTATAGTACATGCATCCAATAAAACCAATAACATACAGGCTAGTGGATCGCTTGAATAAATAATGCAACTTCCAAAGTTTTAATATCAAATCAACCCCACGCTGTTTACATCTCTAATTAAATCCAGTCCCAGCAGACAGACACGCACAAACGAGCCGCACACCCAAAAGTTACTCACACTCACTTTGACTGACACATCCAAAAGTTCCCCGCGCCTGCCGGCCGGATCCTCCCATGCGCGCCCAGCGAGGAGTCGCTTTTTCCGGCCGCGCAGTTTTCCGGCAGCCGCTCTCATGATCCATAGCGTCCAGTCGCTCCGTGTGCCCGCTCAGAGTGCTCTCAGCGCGGCTGCTCTCACCCGCCTCAGCCCCTCTGCAGCTCCACGCCATCTGAAAAGGGGCCGATTGAAAAAGAAGAAGAATGCATCAAGAACAACAAAAGTCACTTATAGCAAGTCTACAAAAACCCCCACCAAACATAATGAGAAGGAGAAAGCTTTATATTTTTTCACCGGGTATTCAGAGATAATTTGAAGCCATTGTTTCTGGCACAGATGGCTCTTTTTAATACAATAACACTGTGAGCTCCACCAACAATAAAAATCTAAAGCCTTCTCCTGAATAACAGTTTTTTGTTCGCTCTTGTAAAGGGCCAACAAAAGCAGTC/ATTTATTGTT GTGAGGTAATGGGCTGGCTTTTTTCAAACGCAAAGAATGGCTATTTGATAAAGATTTTTTACTTCAGAAAATACACTGCC  ...
Additional Sequence
None
Fish
Supplemental Information
Genotyping protocol
None
Citations
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