Genomic Feature
pd325
- ID
- ZDB-ALT-210514-6
- Name
- pd325
- Synonyms
- None
- Affected Genomic Region
-
- en.mdkae20 (1)
- Construct
- None
- Type
- Allele with one deletion (1)
- Protocol
- embryos treated with
- Lab of Origin
- Poss Lab
- Current Source
- Other Pages
-
Notes
| Comment | Citation |
|---|---|
| 1.4 kb Enhancer deletion via CRISPR. Zebrafish genome coordinates are ... | Thompson et al., 2020 |
Variants
- Variant Type
- Small Deletion
- Variant Location
- Chr 7: 39185992 - 39187254 (GRCz11) (1) Details
- Nucleotide change
- AGTCTGCTAAATGCTCAAAATGCATTAAAGAAGTGCGTCAGAGTAAATGCAAATATCTTTAAGCATTTCAAACACACTCTTCATTACTGCCCGTTTTAACTCCCGGAGGAGTTGTGTCAGCCATATCTTTTGAAGGTTGCCATCTTCTGGATAACCAGAGCCACTACAACCCATCACTCTGACAGAAAATGGCTAAAGACTTGCTATATAATGCACTGCTTTTAAACTGCTCTCGACGAGTTAAGACATAAAAACCCTGCCTAACTATTGGATCTGAAATCCGTTTCCCACTAGAGGAAGGACCCCAACCAGCCTCTCTCTTTATCTTTATTCTCTCCTAAATCCACCTGACTGATCATCAGCAGGCATCAAAGCGCTGCCACGCTCCGGACGGCCAGACAACACATCTCTTATTCCTTTTGAAAGCTTCTGACAAACAGACACCCGTTCTCTCCTGCCGACACAGATCACACTCCTTTAACTCTAAGGCTCTTGGTTCTTGAGAGATGAGAAGGTTGATATACAGCAGGCCGGGTCTGGTTCTGTATTTCCCCCTGGGGTGCAGGTGATTCAGAGCGGGGAGAGGATTCTTTACCCCTTATCAAATATGAATCAGCAATTACTCAACTGTGGATTCGAGCAGAGCGGAAAGATAAGTGCCAAGCCTCATTAAATATGAATCACGAATATTCATCTGATATCACCGTGGGAGAAAGCTCTCCAGGACTGTTTTTTCAGCTTTCTTGTACAATTTAACTGTGTACACAAACCTTTGACACCCTAAACTCGCAGAACAGAAGAAGAGCAGCTGTAGATGTGCGTCATGCTGCTAGAGCCAGGGTTAGTGTGTTTTAACAATAGTTTTATTTTTGTTTCTACATTTTATTTATTTTTTAGGTCAAATTATTTGTTTTGGAATATACATTTATATCATGTTAATGTAATGAAAAAAAACTTCAGTCACTGTTTACAAACCATGTGACTTTCAGCCTCAATATGCTGCTTACTATTAGTTGGGATTAGGTATTGGAAATGTGCTTTACAAGTACTAATAAACAGCCAATATCTTAATAACAGGTAGGTAATATGCCACTAGATCAAGATTTCCCAACTATGTTCCTGAGGGCATACCAACCTCTCTCTAATCAAACACAACTGAATCATCTCATCGGAAAGAGAATAAGAGACATAAGAAGAGACTTCAAAACCTGGTCAATGGGTCAGATAAGGGACATCTAAAATATGTACTGTTAGTGTGCCTCA/-
- Variant Notes
- None
Effect on DNA/cDNA, transcript, protein (from publications)
- DNA/cDNA Change
- 1263 bp deleted (1)
- Transcript Consequence
- None
- Protein Consequence
- None
- Flanking Sequence
-
CAATCAAAGAGTGCAAATCTGCCCCGTGGTTAAACTCAACTGACCCCCTGGGCTTCCTAATGATCTGAGCTACTCAGGAACAATTAAACACAATTATCAGGCGGGGAACCAAGAGAACTTCAGGAGAAACAATCAACAATCACATCAAGCCTGTGAATTCTACACACACTTATTTACTATGTGCACAAATTCCACAAAATAAATGTCCTTTATCATAGATATTAAAGTAAAGATAAGCTTCCGTGAAATATTGAGGGTAATCTGGCATATCATTTGTGAATGTAGGCTGCATTTCTAGAGGTTTCTTCATGATGTACGCTGTATGCTAACCTTACAAGAGGCTATGCAGTGCATTAAAAGGTATGTACAAAAGTACATTAAAAGACACAAATGTTTTGTTTCAGGTCATGAATTACCCATAACCTTCTTGTGAGAAGCTGCTGTAATACTGATAAAGTATTAATCCAATAGGCAATTAAAATCCTGTTTGAAGCCACTCA
AGTCTGCTAAATGCTCAAAATGCATTAAAGAAGTGCGTCAGAGTAAATGCAAATATCTTTAAGCATTTCAAACACACTCTTCATTACTGCCCGTTTTAACTCCCGGAGGAGTTGTGTCAGCCATATCTTTTGAAGGTTGCCATCTTCTGGATAACCAGAGCCACTACAACCCATCACTCTGACAGAAAATGGCTAAAGACTTGCTATATAATGCACTGCTTTTAAACTGCTCTCGACGAGTTAAGACATAAAAACCCTGCCTAACTATTGGATCTGAAATCCGTTTCCCACTAGAGGAAGGACCCCAACCAGCCTCTCTCTTTATCTTTATTCTCTCCTAAATCCACCTGACTGATCATCAGCAGGCATCAAAGCGCTGCCACGCTCCGGACGGCCAGACAACACATCTCTTATTCCTTTTGAAAGCTTCTGACAAACAGACACCCGTTCTCTCCTGCCGACACAGATCACACTCCTTTAACTCTAAGGCTCTTGGTTCTTGAGAGATGAGAAGGTTGATATACAGCAGGCCGGGTCTGGTTCTGTATTTCCCCCTGGGGTGCAGGTGATTCAGAGCGGGGAGAGGATTCTTTACCCCTTATCAAATATGAATCAGCAATTACTCAACTGTGGATTCGAGCAGAGCGGAAAGATAAGTGCCAAGCCTCATTAAATATGAATCACGAATATTCATCTGATATCACCGTGGGAGAAAGCTCTCCAGGACTGTTTTTTCAGCTTTCTTGTACAATTTAACTGTGTACACAAACCTTTGACACCCTAAACTCGCAGAACAGAAGAAGAGCAGCTGTAGATGTGCGTCATGCTGCTAGAGCCAGGGTTAGTGTGTTTTAACAATAGTTTTATTTTTGTTTCTACATTTTATTTATTTTTTAGGTCAAATTATTTGTTTTGGAATATACATTTATATCATGTTAATGTAATGAAAAAAAACTTCAGTCACTGTTTACAAACCATGTGACTTTCAGCCTCAATATGCTGCTTACTATTAGTTGGGATTAGGTATTGGAAATGTGCTTTACAAGTACTAATAAACAGCCAATATCTTAATAACAGGTAGGTAATATGCCACTAGATCAAGATTTCCCAACTATGTTCCTGAGGGCATACCAACCTCTCTCTAATCAAACACAACTGAATCATCTCATCGGAAAGAGAATAAGAGACATAAGAAGAGACTTCAAAACCTGGTCAATGGGTCAGATAAGGGACATCTAAAATATGTACTGTTAGTGTGCCTCA/- GCGGACAGGGTTGCGAAACCCTGCACTAGATAATAGTGAGAATTGTTACTTGAACTAAAATGTGAACATAATTTTTTATA ... - Additional Sequence
- None
Fish
Supplemental Information
- Genotyping protocol
- None