Genomic Feature

hg47

ID
ZDB-ALT-170809-15
Name
hg47
Synonyms
None
Affected Genomic Region
Construct
None
Type
Allele with one deletion (1)
Protocol
embryos treated with
Lab of Origin
Sood Lab
Current Source
Zebrafish International Resource Center (ZIRC)    ( order this )
Other Pages
Notes
No data available
Genome Browser
Variants
Variant Type
Small Deletion
Variant Location
Chr 6: 42327271 - 42327290 (GRCz11) (1) Details
Nucleotide change
AGTGAAGGCCTGTTTGTACA/-
Variant Notes
Deletion 20 bp in exon 16, cDNA: 1373delTGTACAAACAGGCCTTCACT, p. M458SfsX3.
Effect on DNA/cDNA, transcript, protein (from publications)
DNA/cDNA Change
20 bp deleted in Exon 16 (1)
Transcript Consequence
None
Protein Consequence
None
Sequences
Flanking Sequence
ACATTTAAATGGGCCAATCTGACAAAACTAAATAAATAAAACTTGCTTCTGCGCCAGACCAATATTTTGTAAAGAGATATTTAGACTAAATACAGTATGAAGATGAAAAAATGATTAAAAAAATAAATAAAAATTTAGAACTTTTGTAAGACCTAATAAATGCACTTTTACCTTTTCCTAATATTTTCAAAGTTTGCATAATTGTACCACACCTGTAGTAAACAGACAAAAAGGTTCACAGAGTGAACTGGTATTCATACCTTCACAAACACAGTGAACTGGCTCATCTCTGCTGGTTTCTGAGACACAAGCTCACACAGCAGCTCCAGAGCCACATCCACTTCACCGCTCACACCACTGCATGCGTGTGTGACCAGAGAGCCCACAACCTCCTGCAAAACAAACGCAACACACACAGGGCATGAGTACACATCTCTGAGGGAATCCTTATGTCTGTAAGTCTGCAGTATGTGCACCTGCTGACAGTAGGAGTCAAAGGC
AGTGAAGGCCTGTTTGTACA/- TGTGACCCCCGAAAGGCACCACACAGCAGTCTGGAGAACGCAAGAGTCCCTGAGCCAGAGCCAGGATAGATGGGAAATAACCCCGCATTACCTGCAGGAAACAGATACAGTATATTACCATTTATTACTGTCACTAGGGCTGTGTACAATGTTTACATTCAGCATTTTATTTAGCGATAAAAAGGCAAAAGCCTCTAGATTACGACTCTCATGAGCTTGGAGGACTGCATCCATACATCTCTGCAATGACTCAAATAACATTAATGAAGTCATCTGGAATGGCAAAGAAAGCGTTCCTGCAGGACTCCCAGAGTTCATCAAGTTTCTTTGGATTCATCCTACCCCAGACATGCTCAATAATGTTCATTTCTGGTGACTGGGCTGGCCAATCCTAATAAACATTTGCCCTCTCCTGTGGTTTTATAATGTAATATATAATTGTAGTTTATTTCATTTTTTAACCATGTGTTCTCATCGCAAGGAGGAGTGTGACTGCACAG
Additional Sequence
None
Fish
Supplemental Information
Genotyping protocol
None
Citations