Transcript

rbm39a-209

ID

ZDB-TSCRIPT-091110-1703

Name

rbm39a-209

Previous Names

rbm39a-009
dkey-261o10.1-001
ottdart00000043451

Transcript Type

aberrant processed transcript

Annotation Status

nonsense mediated decay

Annotation Method

Havana

Associated With Genes

rbm39a (1)

Strain

Non Reference Strain

Genome Resources

RNA Central

None

Note

None

Sequence

OTTDART00000043451 (1) [ Show ] (double-click sequence to select)

[Download]

>tpe|OTTDART00000043451|OTTDARG00000008479|ZDB-GENE-040426-2852 rbm39a|OTTDARP00000034448 rbm39a-009 LG_ BX001056.7 Danio rerio protein_coding KNOWN, 2591 bp
CTTCTTATGCAACAAGACGAGACGTGCACGCGCAGGGATT
GTTTGCCGCCAGTTTGCGTGGATTCGAATCAATCGACCAG
GGTTGCAACTGTAGCTGAAACGGACCGTAGATCCGGGATT
TACCGCTCGTTTGTGGAGCCAAGACTGTGACGCTCTGTAG
GCCGCAGTGTAACGTTTTAAGATCAACAACAACAACATGG
CCGATGATTTGGACATTGAAGCAATGCTCGAGGCTCCATA
TAAAAAGACTTGCCTATATCTCACCTCTACTCCCATGAAT
TCCAGTGTGAACTGTCAAAAAAATGAAGGGCGAGATGTGT
GACTGAGGTGGCATCGAGCTCTTTCAATCCACGAAGGCAT
ATGGGGTGAAGATCACTGGAATGGCATCCACCACTGGAGC
TCGTTTAGTGGCTGGCTGCTAGCGTTGCCACTTTGGGTCT
TAGGCTCAGATAGCCTTGGATGACAACAAGTCCTTAAGTA
CCAATGGCCACGAGGAGCGGAGCAAGAAAAAAAAGAGGAG
CAAAAGTCGCAGCCGGAGTCGGGACAGGAAGAGAAGCAAG
AGTCGCGAGCGCAAAAAGAGTCATGACCGGAGGAGGAGCC
GCAGCAGAGACCGGAAGCGCAGCCGCAGCAAGGAGAGACG
TCGCAGCCGTTCTCGGAGCAGGGAGCGCGGCGGTCGCTAC
AGAGCTCCATTTTCTGGCCTGAAATTTAACGGTGGTCCCA
GGGGGAAGACTGGCCCACCACCTGCCATCAAACTAAGTCG
AAGAAGGTCTAGAAGCCGAAGTCCTTTCAAGAAAGATAGA
AGCCCTGTAAGACAGCCCATTGACAATCTCACCCCTGAGG
AAAGAGATGCTCGCACAGTGTTCTGTATGCAGCTGGCAGC
CAGAATCCGGCCACGAGACCTAGAAGAATTCTTTTCTGCA
GTTGGAAAAGTCTGTTTGTTTCACTTTGGACAACTTTGAC
CCGTTTCCCCACTAAGCTTGGATTCTAATTGATTATGTTT
TTCTTTTAAGGTACGAGATGTGCGAATCATCTCTGACCGA
AACTCCAGAAGATCCAAAGGAATTGCTTACATTGAGTTTG
TGGATTCCACATCTGTACCCCTGGCAATTGGTCTATCTGG
ACAAAGGCTTCTTGGAGTACCAATCATTGTCCAGGCTTCA
CAGGCTGAGAAGAACAGAGCCGCTGCATTGGCCAATAACT
TGCAGAAGGGCAGCGCAGGACCCATGAGGCTCTATGTTGG
CTCATTGCATTTCAACATCACAGAAGACATGCTCCGAGGC
ATTTTTGAACCATTTGGAAGAATTGATAGTATCCAACTGA
TGATGGACAGTGAAACAGGACGATCTAAAGGATATGGTTT
TATCACATTTTCTGATGCTGAATGTGCAAAGAAGGCACTG
GAACAGCTTAATGGCTTTGAGTTGGCTGGTAGACCAATGA
AAGTGGGACATGTGACGGAGCGCACAGATGCCTCCACCGC
CAGCTCCTTCCTGGACAACGATGAGCTAGAAAGAACCGGT
ATTGATCTGGGGACTACAGGAAGACTTCAACTCATGGCCA
GATTAGCTGAGGGAACTGGTTTGCAGATCCCGCCCGCTGC
ACAACAGGCCCTTCAGATGAGTGGCTCCATGGTTGCCATG
GCTGCAGCTACTGCTGCTATGAACCCTGGATTGAGTTTTA
ACATCAATGTGCCAACAAACCAAGCCTTGAATTTACCATC
ACAACCCATCGCAACACACTGTTTCCAGCTGTCCAACATG
TTCAATCCAAACTCAGAAAATGATCATGGTTGGGAAATCG
AAATTCAGGATGATGTCATTGAAGAGTGCAACAAACACGG
TGGAGTCATACACATATATGTGGACAAGAAATCTGCTGAA
GGTAATGTCTATGTGAAGTGTCCCACCATTCCTGCTGCCA
TGGCTGCAGTCAGTGCGCTACATGGACGCTGGTTTGGAGG
TAAAATGATCACAGCAGCTTATGTCCCGCTTCCTACATAC
CACAACCTTTTCCCAGAGTCAGTGCAGGCCACACAGCTTC
TAATCCCCAGTCGTCGGTGATCAATCACCACTGTACAACT
CCACTTTTTCAGCCTTGCTCTTTTTAACTTTTGGACAATA
ATAACAGTTCTGCAAGTTGTGGCACAGGTGTGGTAAGGTA
AAGTTTCACTTGCATACTGTCCTTACAGGTCATGGACAAG
TTCTGTGGTTAAAAAAAATCCTATGTACAGCCTACTTATT
GAATTTTGCTTCTTGATCTTTTATTGTTGGTACATATTTG
TTTTTCTCTTCCACATTTATTGTCTCTGTGAAAGATCTGA
TTGGTATGTTTATCACTCGAGGTAGTGTATAATAATACCA
GAAACGCAGTATAAGTAAGTCTTGGATTCAAACTCTTCAA
TTTTGATCAAATGTCAACATATTCAACTTTTTGGCTCTAT
GAGCTGTGGGAACTAAATGGCTGACAAATATCTTTTGTTC
ATTTAGAGACCACGAGGTTTAGAAACATCTTGTTTTTCTA
ATCAAGATTTTGATTTTTGTAAAGTTCTTGATGAAAAGTT
CATTTCAAATAAAGCAGAGATAACTGAAATA

Related Transcripts

Transcripts related to rbm39a

Type	Name	Annotation Method	Length (nt)	Analysis
aberrant processed transcript	rbm39a-209	Havana	2591 nt
mRNA	rbm39a-201 (1) Ensembl	Havana	2366 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
mRNA	rbm39a-202 (1) Ensembl	Havana	546 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
mRNA	rbm39a-203 (1) Ensembl	Havana	790 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
mRNA	rbm39a-205 (1) Ensembl	Havana	2280 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
ncRNA	rbm39a-002 (1) Ensembl	Havana	2848 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
ncRNA	rbm39a-003 (1) Ensembl	Havana	817 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
ncRNA	rbm39a-005 (1) Ensembl	Havana	1818 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
ncRNA	rbm39a-007 (1) Ensembl	Havana	826 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
ncRNA	rbm39a-008 (1) Ensembl	Havana	843 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
ncRNA	rbm39a-010 (1) Ensembl	Havana	769 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
ncRNA	rbm39a-011 (1) Ensembl	Havana	720 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT

Segment Relationships

Protein Products

No data available

Supporting Sequences

Citations