PUBLICATION
Horizontal Transfer and Evolutionary Profiles of Two Tc1/DD34E Transposons (ZB and SB) in Vertebrates
- Authors
- Jia, W., Asare, E., Liu, T., Zhang, P., Wang, Y., Wang, S., Shen, D., Miskey, C., Gao, B., Ivics, Z., Qian, Q., Song, C.
- ID
- ZDB-PUB-221224-16
- Date
- 2022
- Source
- Genes 13(12): (Journal)
- Registered Authors
- Gao, Bo, Ivics, Zoltan, Song, Chengyi
- Keywords
- SB, Tc1/DD34E, Tc1/mariner, ZB, horizontal transfer, transposon
- MeSH Terms
-
- Animals
- DNA Transposable Elements*/genetics
- Transposases/genetics
- Zebrafish*/genetics
- Zebrafish*/metabolism
- PubMed
- 36553507 Full text @ Genes (Basel)
Citation
Jia, W., Asare, E., Liu, T., Zhang, P., Wang, Y., Wang, S., Shen, D., Miskey, C., Gao, B., Ivics, Z., Qian, Q., Song, C. (2022) Horizontal Transfer and Evolutionary Profiles of Two Tc1/DD34E Transposons (ZB and SB) in Vertebrates. Genes. 13(12):.
Abstract
Both ZeBrafish (ZB), a recently identified DNA transposon in the zebrafish genome, and SB, a reconstructed transposon originally discovered in several fish species, are known to exhibit high transposition activity in vertebrate cells. Although a similar structural organization was observed for ZB and SB transposons, the evolutionary profiles of their homologs in various species remain unknown. In the present study, we compared their taxonomic ranges, structural arrangements, sequence identities, evolution dynamics, and horizontal transfer occurrences in vertebrates. In total, 629 ZB and 366 SB homologs were obtained and classified into four distinct clades, named ZB, ZB-like, SB, and SB-like. They displayed narrow taxonomic distributions in eukaryotes, and were mostly found in vertebrates, Actinopterygii in particular tended to be the major reservoir hosts of these transposons. Similar structural features and high sequence identities were observed for transposons and transposase, notably homologous to the SB and ZB elements. The genomic sequences that flank the ZB and SB transposons in the genomes revealed highly conserved integration profiles with strong preferential integration into AT repeats. Both SB and ZB transposons experienced horizontal transfer (HT) events, which were most common in Actinopterygii. Our current study helps to increase our understanding of the evolutionary properties and histories of SB and ZB transposon families in animals.
Genes / Markers
Expression
Phenotype
Mutations / Transgenics
Human Disease / Model
Sequence Targeting Reagents
Fish
Orthology
Engineered Foreign Genes
Mapping