PUBLICATION
Machine learning discriminates a movement disorder in a zebrafish model of Parkinson's disease
- Authors
- Hughes, G.L., Lones, M.A., Bedder, M., Currie, P.D., Smith, S.L., Pownall, M.E.
- ID
- ZDB-PUB-200830-6
- Date
- 2020
- Source
- Disease models & mechanisms 13(10): (Journal)
- Registered Authors
- Currie, Peter D., Hughes, Gideon
- Keywords
- Artificial intelligence, DJ-1, Gene targeting, PARK7, Parkinson's disease, Video capture
- Datasets
- GEO:GSE135271
- MeSH Terms
-
- Algorithms
- Alleles
- Animals
- Base Sequence
- Brain/pathology
- Disease Models, Animal
- Dopaminergic Neurons/pathology
- Gene Expression Profiling
- Gene Targeting
- Machine Learning*
- Movement
- Movement Disorders/physiopathology*
- Mutation/genetics
- Parkinson Disease/physiopathology*
- Protein Deglycase DJ-1/genetics
- Zebrafish/physiology*
- PubMed
- 32859696 Full text @ Dis. Model. Mech.
Citation
Hughes, G.L., Lones, M.A., Bedder, M., Currie, P.D., Smith, S.L., Pownall, M.E. (2020) Machine learning discriminates a movement disorder in a zebrafish model of Parkinson's disease. Disease models & mechanisms. 13(10):.
Abstract
Animal models of human disease provide an in vivo system that can reveal molecular mechanisms by which mutations cause pathology, and, moreover, have the potential to provide a valuable tool for drug development. Here we have developed a zebrafish model of Parkinson's disease (PD) together with a novel method to screen for movement disorders in adult fish, pioneering a more efficient drug testing route. Mutation of the PARK7 gene (DJ-1) is known to cause monogenic autosomal recessive PD in humans and, using CRISPR/Cas9 gene editing we have generated a DJ-1 loss of function zebrafish with molecular hallmarks of PD. To establish whether there is a human-relevant parkinsonian phenotype in our model, we have adapted proven tools used to diagnose PD in clinics and have developed a novel and unbiased computational method to classify movement disorders in adult zebrafish. Using high-resolution video capture and machine learning, we have extracted novel features of movement from continuous data streams and used an evolutionary algorithm (EA) to classify parkinsonian fish. This method will be widely applicable for assessing zebrafish models of human motor diseases and provide a valuable asset for the therapeutics pipeline. In addition, interrogation of RNA-seq data indicate metabolic reprogramming of brains in the absence of DJ-1, adding to growing evidence that disruption of bioenergetics is a key feature of neurodegeneration.
Genes / Markers
Expression
Phenotype
Mutations / Transgenics
Human Disease / Model
Sequence Targeting Reagents
Fish
Orthology
Engineered Foreign Genes
Mapping