ZFIN Person: Miller, Craig T.

ZFIN ID: ZDB-PERS-970217-10

ZFIN ID: ZDB-PERS-970217-10

Miller, Craig T.

Email:	ctmiller@berkeley.edu
URL:	http://mcb.berkeley.edu/labs/miller/
Affiliation:	Craig Miller Lab
Address:	University of California, Berkeley Department of Molecular & Cell Biology 142 LSA Berkeley, CA 94720 USA
Country:	United States
Phone:	510-642-7840
Fax:	510-643-6791
ORCID ID:

BIOGRAPHY AND RESEARCH INTERESTS

PUBLICATIONS

Square, T.A., Mackey, E.J., Sundaram, S., Weksler, N.C., Chen, Z.Z., Narayanan, S.N., Miller, C.T. (2023) Modulation of tooth regeneration through opposing responses to Wnt and BMP signals in teleosts. Development (Cambridge, England). 150(23):

Square, T.A., Sundaram, S., Mackey, E.J., Miller, C.T. (2021) Distinct tooth regeneration systems deploy a conserved battery of genes. EvoDevo. 12:4

Askary, A., Smeeton, J., Paul, S., Schindler, S., Braasch, I., Ellis, N.A., Postlethwait, J., Miller, C.T., Crump, J.G. (2016) Ancient origin of lubricated joints in bony vertebrates. eLIFE. 5

Erickson, P.A., Cleves, P.A., Ellis, N.A., Schwalbach, K.T., Hart, J.C., Miller, C.T. (2015) A 190 base pair, TGF-β responsive tooth and fin enhancer is required for stickleback Bmp6 expression. Developmental Biology. 401(2):310-23

Kimmel, C.B., Walker, M.B., and Miller, C.T. (2007) Morphing the hyomandibular skeleton in development and evolution. Journal of experimental zoology. Part B, Molecular and developmental evolution. 308(5):609-624

Miller, C.T., Swartz, M.E., Khuu, P.A., Walker, M.B., Eberhart, J.K., and Kimmel, C.B. (2007) mef2ca is required in cranial neural crest to effect Endothelin1 signaling in zebrafish. Developmental Biology. 308(1):144-157

Walker, M.B., Miller, C.T., Swartz, M.E., Eberhart, J.K., and Kimmel, C.B. (2007) phospholipase C, beta 3 is required for Endothelin1 regulation of pharyngeal arch patterning in zebrafish. Developmental Biology. 304(1):194-207

Walker, M.B., Miller, C.T., Talbot, J.C., Stock, D.W., and Kimmel, C.B. (2006) Zebrafish furin mutants reveal intricacies in regulating Endothelin1 signaling in craniofacial patterning. Developmental Biology. 295(1):194-205

Yan, Y.L., Willoughby, J., Liu, D., Crump, J.G., Wilson, C., Miller, C.T., Singer, A., Kimmel, C., Westerfield, M., and Postlethwait, J.H. (2005) A pair of Sox: distinct and overlapping functions of zebrafish sox9 co-orthologs in craniofacial and pectoral fin development. Development (Cambridge, England). 132(5):1069-1083

Miller, C.T., Maves, L., and Kimmel, C.B. (2004) moz regulates Hox expression and pharyngeal segmental identity in zebrafish. Development (Cambridge, England). 131(10):2443-2461

Miller, C.T., Yelon, D., Stainier, D.Y., and Kimmel, C.B. (2003) Two endothelin 1 effectors, hand2 and bapx1, pattern ventral pharyngeal cartilage and the jaw joint. Development (Cambridge, England). 130(7):1353-1365

Kimmel, C.B., Ullmann, B., Walker, M., Miller, C.T., and Crump, J.G. (2003) Endothelin 1-mediated regulation of pharyngeal bone development in zebrafish. Development (Cambridge, England). 130(7):1339-1351

Yan, Y.-L., Miller, C.T., Nissen, R.M., Singer, A., Liu, D., Kirn, A., Draper, B., Willoughby, J., Morcos, P.A., Amsterdam, A., Chung, B.-C., Westerfield, M., Haffter, P., Hopkins, N., Kimmel, C., and Postlethwait, J.H. (2002) A zebrafish sox9 gene required for cartilage morphogenesis. Development (Cambridge, England). 129(21):5065-5079

Miller, C.T. and Kimmel, C.B. (2001) Morpholino phenocopies of endothelin 1 (sucker) and other anterior arch class mutations. Genesis (New York, N.Y. : 2000). 30(3):186-187

Kimmel, C.B., Miller, C.T., and Keynes, R.J. (2001) Neural crest patterning and the evolution of the jaw. Journal of anatomy. 199(1-2):105-120

Kimmel, C.B., Miller, C.T., and Moens, C.B. (2001) Specification and morphogenesis of the zebrafish larval head skeleton. Developmental Biology. 233(2):239-257

Miller, C.T. (2001) Genetic analysis of zebrafish head skeletal development. Ph.D. Thesis.

Miller, C.T., Schilling, T.F., Lee, K., Parker, J., and Kimmel, C.B. (2000) sucker encodes a zebrafish Endothelin-1 required for ventral pharyngeal arch development. Development (Cambridge, England). 127(17):3815-3828

Kimmel, C.B., Miller, C.T., Kruse, G., Ullmann, B., BreMiller, R.A., Larison, K.D., and Snyder, H.C. (1998) The shaping of the pharnygeal cartilages during early development of the zebrafish. Developmental Biology. 203:245-263

NON-ZEBRAFISH PUBLICATIONS
Ellis, N.A., Glazer, A.M., Donde, N.N., Cleves, P.A., Agoglia, R.M., and Miller, C.T. (2015) Distinct developmental genetic mechanisms underlie convergently evolved tooth gain in sticklebacks. Development 142: 2442-2451.

Glazer, A.M., Killingbeck, E.E., Mitros, T., Rokhsar, D.S., and Miller, C.T. (2015) Genome assembly improvement and mapping convergently evolved skeletal traits in sticklebacks with Genotyping-by-Sequencing. G3 5: 1463-1472.

Erickson, P.A., Cleves, P.A., Ellis, N.A., Schwalbach, K.T., Hart, J.C., and Miller, C.T. (2015) A 190 base pair, TGF-β responsive tooth and fin enhancer is required for stickleback Bmp6 expression. Dev. Biol. 401: 310-323. PMCID: PMC4424077.

Cleves, P.A., Ellis, N.A., Jimenez, M.T., Nunez, S.M., Schluter, D., Kingsley, D.M., and Miller, C.T. (2014) Evolved tooth gain in sticklebacks is associated with a cis-regulatory allele of Bmp6. Proc. Nat. Acad. U.S.A. 111: 13912-13917. PMCID: PMC4183278.

Erickson, P.A., Glazer, A.M., Cleves, P.A., Smith, A.S. and Miller, C.T. (2014) Two developmentally temporal quantitative trait loci underlie convergent evolution of increased branchial bone length in sticklebacks. Proc. R. Soc. B 281: 20140822. PMCID: PMC4083797.

Miller, C.T.*, Glazer, A.M.*, Summers, B.R., Norman, A., Shapiro, M.D., Blackman, B.K., Cole, B., Peichel, C.L., Schluter, D., Kingsley, D.M. (* = co-first authors) (2014) Modular skeletal evolution in sticklebacks is controlled by additive and clustered quantitative trait loci. Genetics 197: 405-20. PMCID: PMC4012497.

Glazer, A.M., Cleves, P.A., Erickson, P.A., Lam, A.Y., and Miller, C.T. (2014) Parallel developmental genetic features underlie stickleback gill raker evolution. EvoDevo 5: 19. PMCID: PMC4029907.

Yim K.M., Brewer M.S., Miller C.T., and Gillespie R.G. (2014) Comparative transcriptomics of maturity-associated color change in Hawaiian spiders. J. Hered. 105 Suppl 1:771-781. PMID: 25149253.

Jones, F.C., Grabherr, M.G., Chan, Y.F., Russell, P., Mauceli, E., Johnson, J., Pirun, M., Zody, M.C., White, S., Birney, E., Searle, S., Schmutz, J., Grimwood, J., Dickson, M.C., Myers, R.M., Miller, C.T., Summers, B.R., Knecht, A.K., Brady, S.D., Zhang, H., Pollen, A.A., Howes, T., Amemiya, C., Broad Institute Genome Sequencing Platform and Whole Genome Assembly Team, Lander, E.S., Palma, F., Kerstin Lindblad-Toh, K., and Kingsley, D.M. (2012) The genomic basis of adaptive evolution in threespine sticklebacks. Nature 484:55-61. PMCID: PMC3322419.

Albert, A.Y.K., Sawaya, S., Vines, T.H., Knecht, A., Miller, C.T., Summers, B.R., Balabhadra, S., Kingsley, D.M., and Schluter, D. (2008) The genetics of adaptive shape shift in stickleback: pleiotropy and effect size. Evolution 62:76-85. PMID: 18005154.

Miller, C.T., Beleza, S., Pollen, A.A., Schluter, D., Kittles, R.A., Shriver, M.D., and Kingsley, D.M. (2007) Cis-regulatory changes in Kit ligand expression and parallel evolution of pigmentation in sticklebacks and humans. Cell 131:1179-1189. PMCID: PMC2900316.

Miller, C., McDonald, J., and Francis, D. (1996) Evolution of promoter sequences: elements of a canonical promoter for prespore genes of Dictyostelium. J. Mol. Evol. 43:185-193. PMID: 8703084.