ZFIN ID: ZDB-PERS-180327-3
Ullmann, Jeremy
Email: jeremy.ullmann@childrens.harvard.edu
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Affiliation:
Address: Boston Children's Hospital and Harvard Medical School Department of Neurology 3 Blackfan Circle Boston, MA 02115
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Phone:
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ORCID ID: 0000-0002-3073-9151


BIOGRAPHY AND RESEARCH INTERESTS
Central Nervous System Disorders
Brain Mapping

Acute multi-sgRNA knockdown of KEOPS complex genes reproduces the microcephaly phenotype of the stable knockout zebrafish model.
Jobst-Schwan T, Schmidt JM, Schneider R, Hoogstraten CA, Ullmann JFP, Schapiro D, Majmundar AJ, Kolb A, Eddy K, Shril S, Braun DA, Poduri A, Hildebrandt F.

PLoS One. 2018 Jan 18;13(1):e0191503. doi: 10.1371/journal.pone.0191503.

Mutations in KEOPS-complex genes cause nephrotic syndrome with primary microcephaly.
Braun DA, Rao J, Mollet G, Schapiro D, Daugeron MC, Tan W, Gribouval O, Boyer O, Revy P, Jobst-Schwan T, Schmidt JM, Lawson JA, Schanze D, Ashraf S, Ullmann JFP, Hoogstraten CA, Boddaert N, Collinet B, Martin G, Liger D, Lovric S, Furlano M, Guerrera IC, Sanchez-Ferras O, Hu JF, Boschat AC, Sanquer S, Menten B, Vergult S, De Rocker N, Airik M, Hermle T, Shril S, Widmeier E, Gee HY, Choi WI, Sadowski CE, Pabst WL, Warejko JK, Daga A, Basta T, Matejas V, Scharmann K, Kienast SD, Behnam B, Beeson B, Begtrup A, Bruce M, Ch'ng GS, Lin SP, Chang JH, Chen CH, Cho MT, Gaffney PM, Gipson PE, Hsu CH, Kari JA, Ke YY, Kiraly-Borri C, Lai WM, Lemyre E, Littlejohn RO, Masri A, Moghtaderi M, Nakamura K, Ozaltin F, Praet M, Prasad C, Prytula A, Roeder ER, Rump P, Schnur RE, Shiihara T, Sinha MD, Soliman NA, Soulami K, Sweetser DA, Tsai WH, Tsai JD, Topaloglu R, Vester U, Viskochil DH, Vatanavicharn N, Waxler JL, Wierenga KJ, Wolf MTF, Wong SN, Leidel SA, Truglio G, Dedon PC, Poduri A, Mane S, Lifton RP, Bouchard M, Kannu P, Chitayat D, Magen D, Callewaert B, van Tilbeurgh H, Zenker M, Antignac C, Hildebrandt F.

Nat Genet. 2017 Oct;49(10):1529-1538. doi: 10.1038/ng.3933.


A Model Program for Translational Medicine in Epilepsy Genetics.
Smith LA, Ullmann JFP, Olson HE, Achkar CM, Truglio G, Kelly M, Rosen-Sheidley B, Poduri A.

J Child Neurol. 2017 Mar;32(4):429-436. doi: 10.1177/0883073816685654. Epub 2017 Jan 6.


Molecular psychiatry of zebrafish.
Stewart AM, Ullmann JFP, Norton WH, Parker MO, Brennan CH, Gerlai R, Kalueff AV.

Mol Psychiatry. 2015 Feb;20(1):2-17. doi: 10.1038/mp.2014.128.


Enhanced characterization of the zebrafish brain as revealed by super-resolution track-density imaging.
Ullmann JFP, Calamante F, Collin SP, Reutens DC, Kurniawan ND.

Brain Struct Funct. 2015 Jan;220(1):457-68. doi: 10.1007/s00429-013-0667-7.


A method for detecting molecular transport within the cerebral ventricles of live zebrafish (Danio rerio) larvae.
Turner MH, Ullmann JFP, Kay AR.

J Physiol. 2012 May 15;590(10):2233-40. doi: 10.1113/jphysiol.2011.225896.


A three-dimensional digital atlas of the zebrafish brain.
Ullmann JF, Cowin G, Kurniawan ND, Collin SP.

Neuroimage. 2010 May 15;51(1):76-82. doi: 10.1016/j.neuroimage.2010.01.086.


Magnetic resonance histology of the adult zebrafish brain: optimization of fixation and gadolinium contrast enhancement.
Ullmann JF, Cowin G, Kurniawan ND, Collin SP.

NMR Biomed. 2010 May;23(4):341-6. doi: 10.1002/nbm.1465. Epub 2009 Nov 30.


PUBLICATIONS
Shemesh, O.A., Linghu, C., Piatkevich, K.D., Goodwin, D., Celiker, O.T., Gritton, H.J., Romano, M.F., Gao, R., Yu, C.J., Tseng, H.A., Bensussen, S., Narayan, S., Yang, C.T., Freifeld, L., Siciliano, C.A., Gupta, I., Wang, J., Pak, N., Yoon, Y.G., Ullmann, J.F.P., Guner-Ataman, B., Noamany, H., Sheinkopf, Z.R., Park, W.M., Asano, S., Keating, A.E., Trimmer, J.S., Reimer, J., Tolias, A.S., Bear, M.F., Tye, K.M., Han, X., Ahrens, M.B., Boyden, E.S. (2020) Precision Calcium Imaging of Dense Neural Populations via a Cell-Body-Targeted Calcium Indicator. Neuron. 107(3):470-486.e11
Lin, X., Duan, X., Jacobs, C., Ullmann, J., Chan, C.Y., Chen, S., Cheng, S.H., Zhao, W.N., Poduri, A., Wang, X., Haggarty, S.J., Shi, P. (2018) High-throughput brain activity mapping and machine learning as a foundation for systems neuropharmacology. Nature communications. 9:5142
LaCoursiere, C.M., Ullmann, J.F.P., Poduri, A. (2018) An Open-Source Husbandry Repository. Zebrafish. 15(6):656-658
Nguyen, H.D., Ullmann, J.F.P., McLachlan, G.J., Voleti, V., Li, W., Hillman, E.M.C., Reutens, D.C., Janke, A.L. (2018) Whole-Volume Clustering of Time Series Data from Zebrafish Brain Calcium Images via Mixture Modeling. Statistical analysis and data mining. 11:5-16
Jobst-Schwan, T., Schmidt, J.M., Schneider, R., Hoogstraten, C.A., Ullmann, J.F.P., Schapiro, D., Majmundar, A.J., Kolb, A., Eddy, K., Shril, S., Braun, D.A., Poduri, A., Hildebrandt, F. (2018) Acute multi-sgRNA knockdown of KEOPS complex genes reproduces the microcephaly phenotype of the stable knockout zebrafish model. PLoS One. 13:e0191503
Braun, D.A., Rao, J., Mollet, G., Schapiro, D., Daugeron, M.C., Tan, W., Gribouval, O., Boyer, O., Revy, P., Jobst-Schwan, T., Schmidt, J.M., Lawson, J.A., Schanze, D., Ashraf, S., Ullmann, J.F.P., Hoogstraten, C.A., Boddaert, N., Collinet, B., Martin, G., Liger, D., Lovric, S., Furlano, M., Guerrera, I.C., Sanchez-Ferras, O., Hu, J.F., Boschat, A.C., Sanquer, S., Menten, B., Vergult, S., De Rocker, N., Airik, M., Hermle, T., Shril, S., Widmeier, E., Gee, H.Y., Choi, W.I., Sadowski, C.E., Pabst, W.L., Warejko, J.K., Daga, A., Basta, T., Matejas, V., Scharmann, K., Kienast, S.D., Behnam, B., Beeson, B., Begtrup, A., Bruce, M., Ch'ng, G.S., Lin, S.P., Chang, J.H., Chen, C.H., Cho, M.T., Gaffney, P.M., Gipson, P.E., Hsu, C.H., Kari, J.A., Ke, Y.Y., Kiraly-Borri, C., Lai, W.M., Lemyre, E., Littlejohn, R.O., Masri, A., Moghtaderi, M., Nakamura, K., Ozaltin, F., Praet, M., Prasad, C., Prytula, A., Roeder, E.R., Rump, P., Schnur, R.E., Shiihara, T., Sinha, M.D., Soliman, N.A., Soulami, K., Sweetser, D.A., Tsai, W.H., Tsai, J.D., Topaloglu, R., Vester, U., Viskochil, D.H., Vatanavicharn, N., Waxler, J.L., Wierenga, K.J., Wolf, M.T.F., Wong, S.N., Leidel, S.A., Truglio, G., Dedon, P.C., Poduri, A., Mane, S., Lifton, R.P., Bouchard, M., Kannu, P., Chitayat, D., Magen, D., Callewaert, B., van Tilbeurgh, H., Zenker, M., Antignac, C., Hildebrandt, F. (2017) Mutations in KEOPS-complex genes cause nephrotic syndrome with primary microcephaly. Nature Genetics. 49(10):1529-1538
Stewart, A.M., Ullmann, J.F., Norton, W.H., Parker, M.O., Brennan, C.H., Gerlai, R., Kalueff, A.V. (2015) Molecular psychiatry of zebrafish. Molecular psychiatry. 20(1):2-17
Ullmann, J.F., Calamante, F., Collin, S.P., Reutens, D.C., Kurniawan, N.D. (2015) Enhanced characterization of the zebrafish brain as revealed by super-resolution track-density imaging. Brain structure & function. 220(1):457-68
Turner, M.H., Ullmann, J.F., and Kay, A.R. (2012) A method for detecting molecular transport within the cerebral ventricles of live zebrafish (Danio rerio) larvae. The Journal of physiology. 590(10):2233-2240
Ullmann, J.F., Cowin, G., Kurniawan, N.D., and Collin, S.P. (2010) A three-dimensional digital atlas of the zebrafish brain. NeuroImage. 51(1):76-82
Ullmann, J.F., Cowin, G., Kurniawan, N.D., and Collin, S.P. (2010) Magnetic resonance histology of the adult zebrafish brain: optimization of fixation and gadolinium contrast enhancement. NMR in Biomedicine. 23(4):341-346

NON-ZEBRAFISH PUBLICATIONS