ZFIN Person: Keller, Philipp

ZFIN ID: ZDB-PERS-130116-4

Keller, Philipp

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Country:	United States
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BIOGRAPHY AND RESEARCH INTERESTS

PUBLICATIONS

Keller, J.P., Marvin, J.S., Lacin, H., Lemon, W.C., Shea, J., Kim, S., Lee, R.T., Koyama, M., Keller, P.J., Looger, L.L. (2021) In vivo glucose imaging in multiple model organisms with an engineered single-wavelength sensor. Cell Reports. 35:109284

Azizi, A., Herrmann, A., Wan, Y., Buse, S.J., Keller, P.J., Goldstein, R.E., Harris, W.A. (2020) Nuclear crowding and nonlinear diffusion during interkinetic nuclear migration in the zebrafish retina. eLIFE. 9:

Sato, Y., Hilbert, L., Oda, H., Wan, Y., Heddleston, J.M., Chew, T.L., Zaburdaev, V., Keller, P., Lionnet, T., Vastenhouw, N., Kimura, H. (2019) Histone H3K27 acetylation precedes active transcription during zebrafish zygotic genome activation as revealed by live-cell analysis. Development (Cambridge, England). 146(19):

Wan, Y., Wei, Z., Looger, L.L., Koyama, M., Druckmann, S., Keller, P.J. (2019) Single-Cell Reconstruction of Emerging Population Activity in an Entire Developing Circuit. Cell. 179(2):355-372.e23

Vladimirov, N., Wang, C., Höckendorf, B., Pujala, A., Tanimoto, M., Mu, Y., Yang, C.T., Wittenbach, J.D., Freeman, J., Preibisch, S., Koyama, M., Keller, P.J., Ahrens, M.B. (2018) Brain-wide circuit interrogation at the cellular level guided by online analysis of neuronal function. Nature Methods. 15:1117-1125

Royer, L.A., Lemon, W.C., Chhetri, R.K., Keller, P.J. (2018) A practical guide to adaptive light-sheet microscopy. Nature Protocols. 13(11):2462-2500

Royer, L.A., Lemon, W.C., Chhetri, R.K., Wan, Y., Coleman, M., Myers, E.W., Keller, P.J. (2016) Adaptive light-sheet microscopy for long-term, high-resolution imaging in living organisms. Nature Biotechnology. 34(12):1267-1278

Paksa, A., Bandemer, J., Hoeckendorf, B., Razin, N., Tarbashevich, K., Minina, S., Meyen, D., Biundo, A., Leidel, S.A., Peyrieras, N., Gov, N.S., Keller, P.J., Raz, E. (2016) Repulsive cues combined with physical barriers and cell-cell adhesion determine progenitor cell positioning during organogenesis. Nature communications. 7:11288

Stegmaier, J., Amat, F., Lemon, W.C., McDole, K., Wan, Y., Teodoro, G., Mikut, R., Keller, P.J. (2016) Real-Time Three-Dimensional Cell Segmentation in Large-Scale Microscopy Data of Developing Embryos. Developmental Cell. 36:225-240

Beerman, R.W., Matty, M.A., Au, G.G., Looger, L.L., Choudhury, K.R., Keller, P.J., Tobin, D.M. (2015) Direct In Vivo Manipulation and Imaging of Calcium Transients in Neutrophils Identify a Critical Role for Leading-Edge Calcium Flux. Cell Reports. 13(10):2107-17

Chhetri, R.K., Amat, F., Wan, Y., Höckendorf, B., Lemon, W.C., Keller, P.J. (2015) Whole-animal functional and developmental imaging with isotropic spatial resolution. Nature Methods. 12(12):1171-8

Ingold, E., Vom Berg-Maurer, C.M., Burckhardt, C.J., Lehnherr, A., Rieder, P., Keller, P.J., Stelzer, E.H., Greber, U.F., Neuhauss, S.C., Gesemann, M. (2015) Proper migration and axon outgrowth of zebrafish cranial motoneuron subpopulations require the cell adhesion molecule MDGA2A. Biology Open. 4(2):146-54

Keller, P.J., Ahrens, M.B., Freeman, J. (2015) Light-sheet imaging for systems neuroscience. Nature Methods. 12:27-9

Crespo, C.L., Vernieri, C., Keller, P.J., Garrè, M., Bender, J.R., Wittbrodt, J., Pardi, R. (2014) The PAR complex controls the spatiotemporal dynamics of F-actin and the MTOC in directionally migrating leukocytes. Journal of Cell Science. 127:4381-95

Amat, F., Lemon, W., Mossing, D.P., McDole, K., Wan, Y., Branson, K., Myers, E.W., Keller, P.J. (2014) Fast, accurate reconstruction of cell lineages from large-scale fluorescence microscopy data. Nature Methods. 11(9):951-8

Vladimirov, N., Mu, Y., Kawashima, T., Bennett, D.V., Yang, C.T., Looger, L.L., Keller, P.J., Freeman, J., Ahrens, M.B. (2014) Light-sheet functional imaging in fictively behaving zebrafish. Nature Methods. 11(9):883-4

Keller, P.J. (2013) In vivo imaging of zebrafish embryogenesis. Methods (San Diego, Calif.). 62(3):268-78

Keller, P.J. (2013) Imaging morphogenesis: technological advances and biological insights. Science (New York, N.Y.). 340(6137):1234168

Amat, F., and Keller, P.J. (2013) Towards comprehensive cell lineage reconstructions in complex organisms using light-sheet microscopy. Development, growth & differentiation. 55(4):563-578

Ahrens, M.B., Orger, M.B., Robson, D.N., Li, J.M., and Keller, P.J. (2013) Whole-brain functional imaging at cellular resolution using light-sheet microscopy. Nature Methods. 10(5):413-20

Amat, F., Myers, E.W., and Keller, P.J. (2013) Fast and robust optical flow for time-lapse microscopy using super-voxels. Bioinformatics (Oxford, England). 29(3):373-380

Keller, P.J., Schmidt, A.D., Santella, A., Khairy, K., Bao, Z., Wittbrodt, J., and Stelzer, E.H. (2010) Fast, high-contrast imaging of animal development with scanned light sheet-based structured-illumination microscopy. Nature Methods. 7(8):637-642

NON-ZEBRAFISH PUBLICATIONS