ZFIN ID: ZDB-PERS-091124-1
Bobe, Julien
Email: julien.bobe@inrae.fr
URL: http://www6.rennes.inrae.fr/lpgp
Affiliation: Bobe Lab
Address: UR1037 – Laboratoire de Physiologie et Génomique des Poissons (LPGP) Campus de Beaulieu – Bâtiment 16A 35000 RENNES
Phone: +33 6 81 64 27 60
ORCID ID: 0000-0002-9355-8227


Yilmaz, O., Patinote, A., Com, E., Pineau, C., Bobe, J. (2021) Knock out of specific maternal vitellogenins in zebrafish (Danio rerio) evokes vital changes in egg proteomic profiles that resemble the phenotype of poor quality eggs. BMC Genomics. 22:308
Yilmaz, O., Com, E., Lavigne, R., Pineau, C., Bobe, J. (2021) Liquid Chromatography and Tandem Mass Spectrometry in Label-Free Protein Quantification of Zebrafish (Danio rerio) Eggs. Methods in molecular biology (Clifton, N.J.). 2218:277-290
Lescat, L., Véron, V., Mourot, B., Péron, S., Chenais, N., Dias, K., Riera, N., Beaumatin, F., Pinel, K., Priault, M., Panserat, S., Salin, B., Guiguen, Y., Bobe, J., Herpin, A., Seiliez, I. (2020) Chaperone-Mediated Autophagy in the light of evolution: insight from fish. Molecular Biology and Evolution. 37(10):2887-2899
Yilmaz, O., Patinote, A., Nguyen, T., Com, E., Pineau, C., Bobe, J. (2019) Genome editing reveals reproductive and developmental dependencies on specific types of vitellogenin in zebrafish (Danio rerio). Molecular reproduction and development. 86(9):1168-1188
Cheung, C.T., Nguyen, T.V., Le Cam, A., Patinote, A., Journot, L., Reynes, C., Bobe, J. (2019) What makes a bad egg? Egg transcriptome reveals dysregulation of translational machinery and novel fertility genes important for fertilization. BMC Genomics. 20:584
Cheung, C.T., Pasquier, J., Bouleau, A., Nguyen, T., Chesnel, F., Guiguen, Y., Bobe, J. (2018) Double maternal-effect: duplicated nucleoplasmin 2 genes, npm2a and npm2b, with essential but distinct functions are shared by fish and tetrapods. BMC Evolutionary Biology. 18:167
Cheung, C.T., Patinote, A., Guiguen, Y., Bobe, J. (2018) foxr1 is a novel maternal-effect gene in fish that is required for early embryonic success.. PeerJ. 6:e5534
Elis, S., Desmarchais, A., Cardona, E., Fouchecourt, S., Dalbies-Tran, R., Nguyen, T., Thermes, V., Maillard, V., Papillier, P., Uzbekova, S., Bobe, J., Couderc, J.L., Monget, P. (2018) Genes involved in Drosophila melanogaster ovarian function are highly conserved throughout evolution. Genome biology and evolution. 10(10):2629-2642
Lescat, L., Herpin, A., Mourot, B., Véron, V., Guiguen, Y., Bobe, J., Seiliez, I. (2018) CMA restricted to mammals and birds: myth or reality?. Autophagy. 14(7):1267-1270
Yilmaz, O., Patinote, A., Nguyen, T., Bobe, J. (2018) Multiple vitellogenins in zebrafish (Danio rerio): quantitative inventory of genes, transcripts and proteins, and relation to egg quality. Fish physiology and biochemistry. 44(6):1509-1525
Yilmaz, O., Patinote, A., Nguyen, T.V., Com, E., Lavigne, R., Pineau, C., Sullivan, C.V., Bobe, J. (2017) Scrambled eggs: Proteomic portraits and novel biomarkers of egg quality in zebrafish (Danio rerio). PLoS One. 12:e0188084
Pasquier, J., Braasch, I., Batzel, P., Cabau, C., Montfort, J., Nguyen, T., Jouanno, E., Berthelot, C., Klopp, C., Journot, L., Postlethwait, J.H., Guiguen, Y., Bobe, J. (2017) Evolution of gene expression after whole-genome duplication: New insights from the spotted gar genome. Journal of experimental zoology. Part B, Molecular and developmental evolution. 328(7):709-721
Pasquier, J., Cabau, C., Nguyen, T., Jouanno, E., Severac, D., Braasch, I., Journot, L., Pontarotti, P., Klopp, C., Postlethwait, J.H., Guiguen, Y., Bobe, J. (2016) Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. BMC Genomics. 17:368
Braasch, I., Gehrke, A.R., Smith, J.J., Kawasaki, K., Manousaki, T., Pasquier, J., Amores, A., Desvignes, T., Batzel, P., Catchen, J., Berlin, A.M., Campbell, M.S., Barrell, D., Martin, K.J., Mulley, J.F., Ravi, V., Lee, A.P., Nakamura, T., Chalopin, D., Fan, S., Wcisel, D., Cañestro, C., Sydes, J., Beaudry, F.E., Sun, Y., Hertel, J., Beam, M.J., Fasold, M., Ishiyama, M., Johnson, J., Kehr, S., Lara, M., Letaw, J.H., Litman, G.W., Litman, R.T., Mikami, M., Ota, T., Saha, N.R., Williams, L., Stadler, P.F., Wang, H., Taylor, J.S., Fontenot, Q., Ferrara, A., Searle, S.M., Aken, B., Yandell, M., Schneider, I., Yoder, J.A., Volff, J.N., Meyer, A., Amemiya, C.T., Venkatesh, B., Holland, P.W., Guiguen, Y., Bobe, J., Shubin, N.H., Di Palma, F., Alföldi, J., Lindblad-Toh, K., Postlethwait, J.H. (2016) The spotted gar genome illuminates vertebrate evolution and facilitates human-teleost comparisons. Nature Genetics. 48(4):427-37
Desvignes, T., Nguyen, T., Chesnel, F., Bouleau, A., Fauvel, C., Bobe, J. (2015) X-linked Retinitis Pigmentosa 2 Is a Novel Maternal-Effect Gene Required for Left-Right Asymmetry in Zebrafish. Biology of reproduction. 93(2):42
Bouleau, A., Desvignes, T., Traverso, J.M., Nguyen, T., Chesnel, F., Fauvel, C., Bobe, J. (2014) Maternally-Inherited npm2 mRNA Is Crucial for Egg Developmental Competence in Zebrafish. Biology of reproduction. 91(2):43
Marivin, E., Yano, A., Guérin, A., Nguyen, T.V., Fostier, A., Bobe, J., Guiguen, Y. (2014) Sex hormone-binding globulin characterization and gonadal gene expression during sex differentiation in the rainbow trout, Oncorhynchus mykiss. Molecular reproduction and development. 81(8):757-65
Braasch, I., Guiguen, Y., Loker, R., Letaw, J.H., Ferrara, A., Bobe, J., and Postlethwait, J.H. (2014) Connectivity of vertebrate genomes: Paired-related homeobox (Prrx) genes in spotted gar, basal teleosts, and tetrapods. Comparative biochemistry and physiology. Toxicology & pharmacology : CBP. 163:24-36
Marandel, L., Labbe, C., Bobe, J., Jammes, H., Lareyre, J.J., and Le Bail, P.Y. (2013) Do not put all teleosts in one net: Focus on the sox2 and pou2 genes. Comparative biochemistry and physiology. Part B, Biochemistry & molecular biology. 164(2):69-79
Marandel, L., Labbe, C., Bobe, J., and Le Bail, P.Y. (2012) Evolutionary history of c-myc in teleosts and characterization of the duplicated c-myca genes in goldfish embryos. Molecular reproduction and development. 72(2):85-96
Desvignes, T., Fauvel, C., and Bobe, J. (2011) The nme gene family in zebrafish oogenesis and early development. Naunyn-Schmiedeberg's archives of pharmacology. 384(4-5):439-49
Desvignes, T., Pontarotti, P., Fauvel, C., and Bobe, J. (2009) Nme protein family evolutionary history, a vertebrate perspective. BMC Evolutionary Biology. 9:256
Bobe, J., Mahé, S., Nguyen, T., Rime, H., Vizziano, D., Fostier, A., and Guiguen, Y. (2008) A Novel, Functional, and Highly Divergent Sex Hormone-Binding Globulin that May Participate in the Local Control of Ovarian Functions in Salmonids. Endocrinology. 149(6):2980-2989