ZFIN Person: Nelson, Andrew

ZFIN ID: ZDB-PERS-090109-1

ZFIN ID: ZDB-PERS-090109-1

Nelson, Andrew

Email:	a.nelson.1@warwick.ac.uk
URL:	http://www2.warwick.ac.uk/fac/sci/lifesci/people/anelson/
Affiliation:	Wardle Lab and also: Nelson Lab
Address:	School of Life Sciences Gibbet Hill Campus The University of Warwick Coventry CV4 7AL, UK
Country:	United Kingdom
Phone:	+44 (0)24 765 74523
Fax:
ORCID ID:	0000-0003-1311-8051

BIOGRAPHY AND RESEARCH INTERESTS

PUBLICATIONS

Talbot, C.D., Walsh, M.D., Cutty, S.J., Elsayed, R., Vlachaki, E., Bruce, A.E.E., Wardle, F.C., Nelson, A.C. (2022) Eomes function is conserved between zebrafish and mouse and controls left-right organiser progenitor gene expression via interlocking feedforward loops. Frontiers in cell and developmental biology. 10:982477

Osborn, D.P.S., Li, K., Cutty, S.J., Nelson, A.C., Wardle, F.C., Hinits, Y., Hughes, S.M. (2020) Fgf-driven Tbx protein activities directly induce myf5 and myod to initiate zebrafish myogenesis. Development (Cambridge, England). 147(8):

Berditsch, M., Afonin, S., Reuster, J., Lux, H., Schkolin, K., Babii, O., Radchenko, D.S., Abdullah, I., William, N., Middel, V., Strähle, U., Nelson, A., Valko, K., Ulrich, A.S. (2019) Supreme activity of gramicidin S against resistant, persistent and biofilm cells of staphylococci and enterococci. Scientific Reports. 9:17938

Nelson, A.C., Cutty, S.J., Gasiunas, S.N., Deplae, I., Stemple, D.L., Wardle, F.C. (2017) In Vivo Regulation of the Zebrafish Endoderm Progenitor Niche by T-Box Transcription Factors. Cell Reports. 19:2782-2795

Windner, S.E., Doris, R.A., Ferguson, C.M., Nelson, A.C., Valentin, G., Tan, H., Oates, A.C., Wardle, F.C., Devoto, S.H. (2015) Tbx6, Mesp-b and Ripply1 regulate the onset of skeletal myogenesis in zebrafish. Development (Cambridge, England). 142(6):1159-68

Nelson, A.C., Cutty, S.J., Niini, M., Stemple, D.L., Flicek, P., Houart, C., Bruce, A., Wardle, F.C. (2014) Global identification of Smad2 and Eomesodermin targets in zebrafish identifies a conserved transcriptional network in mesendoderm and a novel role for Eomesodermin in repression of ectodermal gene expression. BMC Biology. 12:81

Jahangiri, L., Nelson, A.C., Wardle, F.C. (2012) A cis-regulatory module upstream of deltaC regulated by Ntla and Tbx16 drives expression in the tailbud, presomitic mesoderm and somites. Developmental Biology. 371:110-120

NON-ZEBRAFISH PUBLICATIONS
Nelson, A. C., Mould, A. W., Bikoff, E. K. and Robertson, E. J. (2017). Mapping the chromatin landscape and Blimp1 transcriptional targets that regulate trophoblast differentiation. Scientific Reports 7:6793

Nelson, A. C., Mould, A. W., Bikoff, E. K. and Robertson, E. J. (2016). Single-cell RNA-seq reveals cell type-specific transcriptional signatures at the maternal-foetal interface during pregnancy. Nature Communications 7:11414.

Mould, A. W., Morgan, M. A., Nelson, A. C., Bikoff, E. K. and Robertson, E. J. (2015). Blimp1/Prdm1 Functions in Opposition to Irf1 to Maintain Neonatal Tolerance during Postnatal Intestinal Maturation. PLoS Genetics 11:e1005375.

Bogani, D., Morgan, M. A., Nelson, A. C., Costello, I., McGouran, J. F., Kessler, B. M., Robertson, E. J. and Bikoff, E. K. (2013). The PR/SET domain zinc finger protein Prdm4 regulates gene expression in embryonic stem cells but plays a nonessential role in the developing mouse embryo. Molecular and Cellular Biology 33:3936-3950.

Nelson, A. C. and Wardle, F. C. (2013). Conserved non-coding elements and cis regulation: actions speak louder than words. Development 140:1385-1395.

Nelson, A. C., Pillay, N., Henderson, S., Presneau, N., Tirabosco, R., Halai, D., Berisha, F., Flicek, P., Stemple, D. L., Stern, C. D., et al. (2012). An integrated functional genomics approach identifies the regulatory network directed by brachyury (T) in chordoma. Journal of Pathology 228:274-285.

Ramani, A. K., Calarco, J. A., Pan, Q., Mavandadi, S., Wang, Y., Nelson, A. C., Lee, L. J., Morris, Q., Blencowe, B. J., Zhen, M., et al. (2011). Genome-wide analysis of alternative splicing in Caenorhabditis elegans. Genome Research 21:342-348.

Ramani, A. K., Nelson, A. C., Kapranov, P., Bell, I., Gingeras, T. R. and Fraser, A. G. (2009). High resolution transcriptome maps for wild-type and nonsense-mediated decay-defective Caenorhabditis elegans. Genome Biology 10:R101.