ZFIN Person: Cuppen, Edwin

ZFIN ID: ZDB-PERS-070815-1

Cuppen, Edwin

Email:	e.cuppen@niob.knaw.nl
URL:	http://www.niob.knaw.nl/researchpages/cuppen
Affiliation:	Cuppen Lab
Address:	Genome Biology Group Hubrecht Institute Uppsalalaan 8 Utrecht, 3584 CT Netherlands
Country:	Netherlands
Phone:	+31 30 2121969
Fax:	+31 30 2516554
ORCID ID:

BIOGRAPHY AND RESEARCH INTERESTS

PUBLICATIONS

de Bruin, A., Cornelissen, P.W., Kirchmaier, B.C., Mokry, M., Iich, E., Nirmala, E., Liang, K.H., Végh, A.M., Scholman, K.T., Groot Koerkamp, M.J., Holstege, F.C., Cuppen, E., Schulte-Merker, S., Bakker, W.J. (2016) Genome-wide analysis reveals NRP1 as a direct HIF1α-E2F7 target in the regulation of motorneuron guidance in vivo. Nucleic acids research. 44(8):3549-66

Kuijk, E., Geijsen, N., Cuppen, E. (2015) Pluripotency in the light of the developmental hourglass. Biological reviews of the Cambridge Philosophical Society. 90(2):428-43

van Heesch, S., Simonis, M., van Roosmalen, M.J., Pillalamarri, V., Brand, H., Kuijk, E.W., de Luca, K.L., Lansu, N., Braat, A.K., Menelaou, A., Hao, W., Korving, J., Snijder, S., van der Veken, L.T., Hochstenbach, R., Knegt, A.C., Duran, K., Renkens, I., Alekozai, N., Jager, M., Vergult, S., Menten, B., de Bruijn, E., Boymans, S., Ippel, E., van Binsbergen, E., Talkowski, M.E., Lichtenbelt, K., Cuppen, E., Kloosterman, W.P. (2014) Genomic and functional overlap between somatic and germline chromosomal rearrangements. Cell Reports. 9:2001-10

Kettleborough, R.N., Busch-Nentwich, E.M., Harvey, S.A., Dooley, C.M., de Bruijn, E., van Eeden, F., Sealy, I., White, R.J., Herd, C., Nijman, I.J., Fényes, F., Mehroke, S., Scahill, C., Gibbons, R., Wali, N., Carruthers, S., Hall, A., Yen, J., Cuppen, E., and Stemple, D.L. (2013) A systematic genome-wide analysis of zebrafish protein-coding gene function. Nature. 496(7446):494-7

Joziasse, I.C., Smith, K.A., Chocron, S., van Dinther, M., Guryev, V., van de Smagt, J.J., Cuppen, E., Ten Dijke, P., Mulder, B.J., Maslen, C.L., Reshey, B., Doevendans, P.A., and Bakkers, J. (2011) ALK2 mutation in a patient with Down's syndrome and a congenital heart defect. European journal of human genetics : EJHG. 19(4):389-93

Kettleborough, R.N., Bruijn, E., Eeden, F., Cuppen, E., and Stemple, D.L. (2011) High-throughput target-selected gene inactivation in zebrafish. Methods in cell biology. 104:121-127

Clark, M.D., Guryev, V., Bruijn, E., Nijman, I.J., Tada, M., Wilson, C., Deloukas, P., Postlethwait, J.H., Cuppen, E., and Stemple, D.L. (2011) Single nucleotide polymorphism (SNP) panels for rapid positional cloning in zebrafish. Methods in cell biology. 104:219-235

Busch-Nentwich, E., Kettleborough, R., Fenyes, F., Herd, C., Collins, J., Winkler, S., Brand, M., de Bruijn, E., van Eeden, F., Cuppen, E., and Stemple, D.L. (2010) Sanger Institute Zebrafish Mutation Resource targeted knock-out mutants phenotype and image data submission, Sanger Institute Zebrafish Mutation Resource, MPI Dresden, and Hubrecht laboratory. ZFIN Direct Data Submission.

Busch-Nentwich, E., Kettleborough, R., Fenyes, F., Herd, C., Collins, J., de Bruijn, E., van Eeden, F., Cuppen, E., and Stemple, D.L. (2010) Sanger Institute Zebrafish Mutation Resource targeted knock-out mutants phenotype and image data submission, Sanger Institute Zebrafish Mutation Resource and Hubrecht laboratory. ZFIN Direct Data Submission.

Smith, K.A., Joziasse, I.C., Chocron, S., van Dinther, M., Guryev, V., Verhoeven, M.C., Rehmann, H., van der Smagt, J.J., Doevendans, P.A., Cuppen, E., Mulder, B.J., Ten Dijke, P., and Bakkers, J. (2009) Dominant-Negative ALK2 Allele Associates With Congenital Heart Defects. Circulation. 119(24):3062-3069

de Bruijn, E., Cuppen, E., and Feitsma, H. (2009) Highly Efficient ENU Mutagenesis in Zebrafish. Methods in molecular biology (Clifton, N.J.). 546:3-12

Brittijn, S.A., Duivesteijn, S.J., Belmamoune, M., Bertens, L.F., Bitter, W., Debruijn, J.D., Champagne, D.L., Cuppen, E., Flik, G., Vandenbroucke-Grauls, C.M., Janssen, R.A., de Jong, I.M., de Kloet, E.R., Kros, A., Meijer, A.H., Metz, J.R., van der Sar, A.M., Schaaf, M.J., Schulte-Merker, S., Spaink, H.P., Tak, P.P., Verbeek, F.J., Vervoordeldonk, M.J., Vonk, F.J., Witte, F., Yuan, H., and Richardson, M.K. (2009) Zebrafish development and regeneration: new tools for biomedical research. The International journal of developmental biology. 53(5-6):835-850

Feitsma, H., de Bruijn, E., van de Belt, J., Nijman, I.J., and Cuppen, E. (2008) Mismatch repair deficiency does not enhance ENU mutagenesis in the zebrafish germ line. Mutagenesis. 23(4):325-329

Feitsma, H., Kuiper, R.V., Korving, J., Nijman, I.J., and Cuppen, E. (2008) Zebrafish with mutations in mismatch repair genes develop neurofibromas and other tumors. Cancer research. 68(13):5059-5066

Feitsma, H., Akay, A., and Cuppen, E. (2008) Alkylation damage causes MMR-dependent chromosomal instability in vertebrate embryos. Nucleic acids research. 36(12):4047-4056

Feitsma, H., and Cuppen, E. (2008) Zebrafish as a cancer model. Molecular cancer research : MCR. 6(5):685-694

Leal, M.C., Feitsma, H., Cuppen, E., França, L.R., and Schulz, R.W.. (2008) Completion of meiosis in male zebrafish (Danio rerio) despite lack of DNA mismatch repair gene mlh1. Cell and tissue research. 332(1):133-139

Feitsma, H., Leal, M.C., Moens, P.B., Cuppen, E., and Schulz, R.W. (2007) Mlh1 Deficiency In Zebrafish Results In Male Sterility And Aneuploid As Well As Triploid Progeny In Females. Genetics. 175(4):1561-1569

Kloosterman, W.P., Steiner, F.A., Berezikov, E., de Bruijn, E., van de Belt, J., Verheul, M., Cuppen, E., and Plasterk, R.H. (2006) Cloning and expression of new microRNAs from zebrafish. Nucleic acids research. 34(9):2558-2569

Guryev, V., Koudijs, M.J., Berezikov, E., Johnson, S.L., Plasterk, R.H., van Eeden, F.J., and Cuppen, E. (2006) Genetic variation in the zebrafish. Genome research. 16(4):491-497

Wienholds, E., van Eeden, F., Kosters, M., Mudde, J., Plasterk, R.H., and Cuppen, E. (2003) Efficient target-selected mutagenesis in zebrafish. Genome research. 13:2700-2707

Wienholds, E., Koudijs, M.J., van Eeden, F.J., Cuppen, E., and Plasterk, R.H. (2003) The microRNA-producing enzyme Dicer1 is essential for zebrafish development. Nature Genetics. 35(3):217-218

Hurlstone, A.F., Haramis, A.P., Wienholds, E., Begthel, H., Korving, J., van Eeden, F., Cuppen, E., Zivkovic, D., Plasterk, R.H., and Clevers, H. (2003) The Wnt/beta-catenin pathway regulates cardiac valve formation. Nature. 425(6958):633-637

NON-ZEBRAFISH PUBLICATIONS