ZFIN Person: Mishima, Yuichiro

ZFIN ID: ZDB-PERS-030416-5

ZFIN ID: ZDB-PERS-030416-5

Mishima, Yuichiro

Email:	mishima@cc.kyoto-su.ac.jp
URL:	http://www.mishima-lab.com
Affiliation:	Laboratory of RNA regulation
Address:	Faculty of Lifesciences Kyoto Sangyo University Bldg.15, Room 15B15 Kamigamo Motoyama, Kita-ku Kyoto 603-8555
Country:	Japan
Phone:
Fax:
ORCID ID:	0000-0002-1075-9454

BIOGRAPHY AND RESEARCH INTERESTS

PUBLICATIONS

Zhao, X., Ma, D., Ishiguro, K., Saito, H., Akichika, S., Matsuzawa, I., Mito, M., Irie, T., Ishibashi, K., Wakabayashi, K., Sakaguchi, Y., Yokoyama, T., Mishima, Y., Shirouzu, M., Iwasaki, S., Suzuki, T., Suzuki, T. (2023) Glycosylated queuosines in tRNAs optimize translational rate and post-embryonic growth. Cell. 186(25):5517-5535.e24

Ugajin, N., Imami, K., Takada, H., Ishihama, Y., Chiba, S., Mishima, Y. (2023) Znf598-mediated Rps10/eS10 ubiquitination contributes to the ribosome ubiquitination dynamics during zebrafish development. RNA (New York, N.Y.). 29(12):1910-1927

Mishima, Y., Han, P., Ishibashi, K., Kimura, S., Iwasaki, S. (2022) Ribosome slowdown triggers codon-mediated mRNA decay independently of ribosome quality control. The EMBO journal. 41(5):e109256

Mishima, Y., Inoue, K. (2021) Tethered Function Assay to Study RNA-Regulatory Proteins in Zebrafish Embryos. Methods in molecular biology (Clifton, N.J.). 2218:347-354

Mito, M., Mishima, Y., Iwasaki, S. (2020) Protocol for Disome Profiling to Survey Ribosome Collision in Humans and Zebrafish. STAR protocols. 1:100168

Han, P., Shichino, Y., Schneider-Poetsch, T., Mito, M., Hashimoto, S., Udagawa, T., Kohno, K., Yoshida, M., Mishima, Y., Inada, T., Iwasaki, S. (2020) Genome-wide Survey of Ribosome Collision. Cell Reports. 31:107610

Fujino, Y., Yamada, K., Sugaya, C., Ooka, Y., Ovara, H., Ban, H., Akama, K., Otosaka, S., Kinoshita, H., Yamasu, K., Mishima, Y., Kawamura, A. (2018) Deadenylation by the CCR4-NOT complex contributes to the turnover of hairy-related mRNAs in the zebrafish segmentation clock. FEBS letters. 592(20):3388-3398

Mishima, Y., Tomari, Y. (2017) Pervasive yet nonuniform contributions of Dcp2 and Cnot7 to maternal mRNA clearance in zebrafish. Genes to cells : devoted to molecular & cellular mechanisms. 22(7):670-678

Mishima, Y., Tomari, Y. (2016) Codon Usage and 3' UTR Length Determine Maternal mRNA Stability in Zebrafish. Molecular Cell. 61:874-885

Makino, S., Mishima, Y., Inoue, K., Inada, T. (2015) Roles of mRNA-fate modulators Dhh1 and Pat1 in TNRC6-dependent gene silencing recapitulated in yeast. The Journal of biological chemistry. 290(13):8331-47

Stahlhut, C., Suárez, Y., Lu, J., Mishima, Y., and Giraldez, A.J. (2012) miR-1 and miR-206 regulate angiogenesis by modulating VegfA expression in zebrafish. Development (Cambridge, England). 139(23):4356-4365

Mishima, Y., Fukao, A., Kishimoto, T., Sakamoto, H., Fujiwara, T., and Inoue, K. (2012) Translational inhibition by deadenylation-independent mechanisms is central to microRNA-mediated silencing in zebrafish. Proceedings of the National Academy of Sciences of the United States of America. 109(4):1104-1109

Mishima, Y. (2012) Widespread roles of microRNAs during zebrafish development and beyond. Development, growth & differentiation. 54(1):55-65

Cifuentes, D., Xue, H., Taylor, D.W., Patnode, H., Mishima, Y., Cheloufim, S., Ma, E., Mane, S., Hannon, G.J., Lawson, N.D., Wolfe, S.A., and Giraldez, A.J. (2010) A novel miRNA processing pathway independent of Dicer requires Argonaute2 catalytic activity. Science (New York, N.Y.). 328(5986):1694-1698

Takeda, Y., Mishima, Y., Fujiwara, T., Sakamoto, H., and Inoue, K. (2009) DAZL relieves miRNA-mediated repression of germline mRNAs by controlling poly(A) tail length in zebrafish. PLoS One. 4(10):e7513

Mishima, Y., Abreu-Goodger, C., Staton, A.A., Stahlhut, C., Shou, C., Cheng, C., Gerstein, M., Enright, A.J., and Giraldez, A.J. (2009) Zebrafish miR-1 and miR-133 shape muscle gene expression and regulate sarcomeric actin organization. Genes & Development. 23(5):619-632

Mishima, Y., Giraldez, A.J., Takeda, Y., Fujiwara, T., Sakamoto, H., Schier, A.F., and Inoue, K. (2006) Differential Regulation of Germline mRNAs in Soma and Germ Cells by Zebrafish miR-430. Current biology : CB. 16(21):2135-2142

Giraldez, A.J., Mishima, Y., Rihel, J., Grocock, R.J., Van Dongen, S., Inoue, K., Enright, A.J., and Schier, A.F. (2006) Zebrafish MiR-430 Promotes Deadenylation and Clearance of Maternal mRNAs. Science (New York, N.Y.). 312(5770):75-79

NON-ZEBRAFISH PUBLICATIONS
Fukao, A., Mishima, Y., Takizawa, N., Oka, S., Imataka, H., Pelletier, J., Sonenberg, N., Thoma, C., Fujiwara, T. (2014) MicroRNAs trigger dissociation of eIF4AI and eIF4AII from target mRNAs in humans. Mol Cell. 56(1):79-89.
Hirose, T., Mishima, Y., Tomari, Y. (2014) Elements and machinery of non-coding RNAs: toward their taxonomy. EMBO Reports. 15(5):489-507
Mishima, Y., Stahlhut, C., Giraldez, AJ. (2007) miR-1-2 Gets to the Heart of the Matter. Cell. 129(2):247-9.
Yamakita, S., Mishima, Y., Ikenishi, K. (2004) A novel gene, the protein product of which is mainly expressed in germline cells and in the dorsal structures of Xenopus. Dev Genes Evol. 214(2):89-95.