miRNA Gene
mir196d
- ID
- ZDB-MIRNAG-050712-2
- Name
- microRNA 196d
- Symbol
- mir196d Nomenclature History
- Previous Names
- Type
- miRNA_gene
- Location
- Chr: 16 Mapping Details/Browsers
- Description
- Predicted to enable mRNA regulatory element binding translation repressor activity. Predicted to act upstream of or within miRNA-mediated gene silencing by inhibition of translation and miRNA-mediated gene silencing by mRNA destabilization. Is expressed in brain; gonad; neural tube; pectoral fin; and tail bud. Orthologous to human MIR196B (microRNA 196b).
- Genome Resources
- Note
-
Predicted Stem-Loop Sequence:
5' - AACUGCUAAGUGAUUUAGGUAGUUUUAUGUUGUUGGGCUCUAUUUUAUAUCCCCGCAACACGAAACUGUCUUAAUUGCCUCGCAGUGA - 3' (1) - Comparative Information
-
- All Expression Data
- 3 figures from 2 publications
- Cross-Species Comparison
- High Throughput Data
- Thisse Expression Data
- No data available
Wild Type Expression Summary
- All Phenotype Data
- No data available
- Cross-Species Comparison
- Alliance
Phenotype Summary
Mutations
No data available
Human Disease
Domain, Family, and Site Summary
No data available
Domain Details Per Protein
No data available
- Genome Browsers
Type | Name | Annotation Method | Has Havana Data | Length (nt) | Analysis |
---|---|---|---|---|---|
mRNA |
mir196d-201
(1)
|
Ensembl | 72 nt | ||
miRNA | mir196b.1b-001 | 22 nt |
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Interactions and Pathways
No data available
Plasmids
No data available
Relationship | Marker Type | Marker | Citations |
---|---|---|---|
Contained in | BAC | DKEY-45E15 | |
Contained in | PAC | BUSM1-31B14 |
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Type | Accession # | Sequence | Length (nt/aa) | Analysis |
---|---|---|---|---|
RNA | RefSeq:NR_030664 (1) | 72 nt | ||
Genomic | GenBank:CR392024 (1) | 183486 nt |
- Desvignes, T., Bardou, P., Montfort, J., Sydes, J., Guyomar, C., George, S., Postlethwait, J.H., Bobe, J. (2022) FishmiRNA: An evolutionarily supported microRNA annotation and expression database for ray-finned fishes. Molecular Biology and Evolution. 39(2)
- Xue, S., Ly, T.T.N., Vijayakar, R.S., Chen, J., Ng, J., Mathuru, A.S., Magdinier, F., Reversade, B. (2022) HOX epimutations driven by maternal SMCHD1/LRIF1 haploinsufficiency trigger homeotic transformations in genetically wildtype offspring. Nature communications. 13:3583
- Zhang, X., Yang, F., Liu, F., Tian, Q., Hu, M., Li, P., Zeng, Y. (2022) Conservation of Differential Animal MicroRNA Processing by Drosha and Dicer. Frontiers in molecular biosciences. 8:730006
- He, X., Yan, Y.L., Eberhart, J.K., Herpin, A., Wagner, T.U., Schartl, M., and Postlethwait, J.H. (2011) miR-196 regulates axial patterning and pectoral appendage initiation. Developmental Biology. 357(2):463-77
- Yekta, S., Shih, I.H., and Bartel, D.P. (2004) MicroRNA-directed cleavage of HOXB8 mRNA. Science (New York, N.Y.). 304(5670):594-596
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