ZFIN ID: ZDB-LAB-050728-1
Takada Lab
PI/Director: Takada, Shinji
Co-PI / Senior
Koshida, Sumito
Contact Person: Takada, Shinji
Address: Okazaki Institute for Integrative Bioscience/National Institute for Basic Biology National Institutes of Natural Sciences 5-1 Higashiyama, Myodaiji-cho, Okazaki, 444-8787 Japan
Country: Japan
Phone: 81-564-59-5241
Fax: 81-564-59-5240
Line Designation: nns

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The current goal of our study is understanding of molecular mechanism of trunk and tail development, especially somite development. For this purpose, we have performed ENU mutagenesis screening for mutations affecting morphogenesis of somites in zebrafish and expression pattern screening for genes expressing in the psesomitic mesoderm and the tail bud. With regard to the mutagenesis screening, we obtained 15 mutants with defects in the formation of epithelial somites and mutants with defects in the formation of the tail bud,in 615 F2 families, which corresponded to 662.2 mutagenized genomes. On the other hand, we identified at least 50 genes specifically expressed in the PSM and the tailbud by an in situ hybridization screening of mRNA expressed in the PSM to tailbud region of zebrafish embryos (18- to 21-somite stages).

Kurata, Tomoko Post-Doc Ishitani, Shizuka Graduate Student Utsumi, Hideko Research Staff
Takashiro, Kayoko Fish Facility Staff Matsuda, Mitsuko Administrative Staff

Feng, D., Wang, J., Yang, W., Li, J., Lin, X., Zha, F., Wang, X., Ma, L., Choi, N.T., Mii, Y., Takada, S., Huen, M.S.Y., Guo, Y., Zhang, L., Gao, B. (2021) Regulation of Wnt/PCP signaling through p97/VCP-KBTBD7-mediated Vangl ubiquitination and endoplasmic reticulum-associated degradation. Science advances. 7(20):
Okada, K., Takada, S. (2020) The second pharyngeal pouch is generated by dynamic remodeling of endodermal epithelium in zebrafish. Development (Cambridge, England). 147(24):
Uehara, T., Abe, K., Oginuma, M., Ishitani, S., Yoshihashi, H., Okamoto, N., Takenouchi, T., Kosaki, K., Ishitani, T. (2020) Pathogenesis of CDK8-associated disorder: two patients with novel CDK8 variants and in vitro and in vivo functional analyses of the variants. Scientific Reports. 10:17575
Akieda, Y., Ogamino, S., Furuie, H., Ishitani, S., Akiyoshi, R., Nogami, J., Masuda, T., Shimizu, N., Ohkawa, Y., Ishitani, T. (2019) Cell competition corrects noisy Wnt morphogen gradients to achieve robust patterning in the zebrafish embryo. Nature communications. 10:4710
Ban, H., Yokota, D., Otosaka, S., Kikuchi, M., Kinoshita, H., Fujino, Y., Yabe, T., Ovara, H., Izuka, A., Akama, K., Yamasu, K., Takada, S., Kawamura, A. (2019) Transcriptional autoregulation of zebrafish tbx6 is required for somite segmentation. Development (Cambridge, England). 146(18):
Kinoshita, H., Ohgane, N., Fujino, Y., Yabe, T., Ovara, H., Yokota, D., Izuka, A., Kage, D., Yamasu, K., Takada, S., Kawamura, A. (2018) Functional roles of the Ripply-mediated suppression of segmentation gene expression at the anterior presomitic mesoderm in zebrafish. Mechanisms of Development. 152:21-31
Yabe, T., Hoshijima, K., Yamamoto, T., Takada, S. (2016) Mesp quadruple zebrafish mutant reveals different roles of mesp genes in somite segmentation between mouse and zebrafish. Development (Cambridge, England). 143(15):2842-52
Kawamura, A., Ovara, H., Ooka, Y., Kinoshita, H., Hoshikawa, M., Nakajo, K., Yokota, D., Fujino, Y., Higashijima, S.I., Takada, S., Yamasu, K. (2016) Posterior-anterior gradient of zebrafish hes6 expression in the presomitic mesoderm is established by the combinatorial functions of the downstream enhancer and 3'UTR. Developmental Biology. 409(2):543-54
Yabe, T., Takada, S. (2016) Molecular mechanism for cyclic generation of somites: Lessons from mice and zebrafish. Development, growth & differentiation. 58(1):31-42
Kametani, Y., Chi, N.C., Stainier, D.Y., Takada, S. (2015) Notch signaling regulates venous arterialization during zebrafish fin regeneration. Genes to cells : devoted to molecular & cellular mechanisms. 20(5):427-38
Chen, Q., Takada, R., Takada, S. (2015) Correction: Loss of Porcupine impairs convergent extension during gastrulation in zebrafish. Journal of Cell Science. 128:828
Wanglar, C., Takahashi, J., Yabe, T., Takada, S. (2014) Tbx Protein Level Critical for Clock-Mediated Somite Positioning Is Regulated through Interaction between Tbx and Ripply. PLoS One. 9:e107928
Shimizu, N., Ishitani, S., Sato, A., Shibuya, H., Ishitani, T. (2014) Hipk2 and PP1c Cooperate to Maintain Dvl Protein Levels Required for Wnt Signal Transduction. Cell Reports. 8(5):1391-404
Kimura, T., Nagao, Y., Hashimoto, H., Yamamoto-Shiraishi, Y., Yamamoto, S., Yabe, T., Takada, S., Kinoshita, M., Kuroiwa, A., and Naruse, K. (2014) Leucophores are similar to xanthophores in their specification and differentiation processes in medaka. Proceedings of the National Academy of Sciences of the United States of America. 111(20):7343-7348
Hisano, Y., Ota, S., Takada, S., and Kawahara, A. (2013) Functional cooperation of spns2 and fibronectin in cardiac and lower jaw development. Biology Open. 2(8):789-794
Yabe, T., and Takada, S. (2012) Mesogenin causes embryonic mesoderm progenitors to differentiate during development of zebrafish tail somites. Developmental Biology. 370(2):213-222
Chen, Q., Takada, R., and Takada, S. (2012) Loss of Porcupine impairs convergent extension during gastrulation in zebrafish. Journal of Cell Science. 125(9):2224-2234
Ota, S., Ishitani, S., Shimizu, N., Matsumoto, K., Itoh, M., and Ishitani, T. (2012) NLK positively regulates Wnt/beta-catenin signalling by phosphorylating LEF1 in neural progenitor cells. The EMBO journal. 31(8):1904-1915
Chiu, C.H., Chou, C.W., Takada, S., and Liu, Y.W. (2012) Development and fibronectin signaling requirements of the zebrafish interrenal vessel. PLoS One. 7(8):e43040
Sato, A., Koshida, S., and Takeda, H. (2010) Single-cell analysis of somatotopic map formation in the zebrafish lateral line system. Developmental dynamics : an official publication of the American Association of Anatomists. 239(7):2058-2065
Kawamura, A., Koshida, S., and Takada, S. (2008) Activator-to-repressor conversion of T-box transcription factors by the Ripply family of Groucho/TLE-associated mediators. Molecular and cellular biology. 28(10):3236-3244
Akanuma, T., Koshida, S., Kawamura, A., Kishimoto, Y., and Takada, S. (2007) Paf1 complex homologues are required for Notch-regulated transcription during somite segmentation. EMBO reports. 8(9):858-863
Kawamura, A., Koshida, S., Hijikata, H., Ohbayashi, A., Kondoh, H., and Takada, S. (2005) Groucho-associated transcriptional repressor ripply1 is required for proper transition from the presomitic mesoderm to somites. Developmental Cell. 9(6):735-744
Kawamura, A., Koshida, S., Hijikata, H., Sakaguchi, T., Kondoh, H., and Takada, S. (2005) Zebrafish Hairy/Enhancer of split protein links FGF signaling to cyclic gene expression in the periodic segmentation of somites. Genes & Development. 19(10):1156-1161
Koshida, S., Kishimoto, Y., Ustumi, H., Shimizu, T., Furutani-Seiki, M., Kondoh, H., and Takada, S. (2005) Integrinalpha5-Dependent Fibronectin Accumulation for Maintenance of Somite Boundaries in Zebrafish Embryos. Developmental Cell. 8(4):587-598
Kishimoto, Y., Koshida, S., Furutani-Seiki, M., and Kondoh, H. (2004) Zebrafish maternal-effect mutations causing cytokinesis defect without affecting mitosis or equatorial vasa deposition. Mechanisms of Development. 121(1):79-89
Tonou-Fujimori, N., Takahashi, M., Onodera, H., Kikuta, H., Koshida, S., Takeda, H., and Yamasu, K. (2002) RETRACTED: Expression of the FGF receptor 2 gene (fgfr2) during embryogenesis in the zebrafish Danio rerio. Gene expression patterns : GEP. 2(3-4):183-188
Tonou-Fujimori, N., Takahashi, M., Onodera, H., Kikuta, H., Koshida, S., Takeda, H., and Yamasu, K. (2002) Expression of the FGF receptor 2 gene (fgfr2) during embryogenesis in the zebrafish Danio rerio. Mechanisms of Development. (Suppl.) 119:S173-S178
Koshida, S., Shinya, M., Nikaido, M., Ueno, N., Schulte-Merker, S., Kuroiwa, A., and Takeda, H. (2002) Inhibition of BMP activity by the FGF signal promotes posterior neural development in zebrafish. Developmental Biology. 244(1):9-20
Shinya, M., Koshida, S., Sawada, A., Kuroiwa, A., and Takeda, H. (2001) Fgf signalling through MAPK cascade is required for development of the subpallial telencephalon in zebrafish embryos. Development (Cambridge, England). 128(21):4153-4164
Rodaway, A., Takeda, H., Koshida, S., Broadbent, J., Price, B., Smith, J.C., Patient, R., and Holder, N. (1999) Induction of the mesendoderm in the zebrafish germ ring by yolk cell-derived TGF-ß; family signals and discrimination of mesoderm and endoderm by FGF. Development (Cambridge, England). 126(14):3067-3078
Koshida, S., Shinya, M., Mizuno, T., Kuroiwa, A., and Takeda, H. (1998) Initial anteroposterior pattern of the zebrafish central nervous system is determined by differential competence of the epiblast. Development (Cambridge, England). 125:1957-1966
Makita, R., Mizuno, T., Koshida, S., Kuroiwa, A., and Takeda, H. (1998) Zebrafish wnt11: pattern and regulation of the expression by the yolk cell and no tail activity. Mechanisms of Development. 71:165-176