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Figure 5—figure supplement 1. An endocytic trafficking model predicts wave formation in Z<italic toggle='yes'>oep</italic> mutants.

(A) Schematic of model incorporating endocytic trafficking of Nodal receptors. Simulations presented here were performed on a one-dimensional tissue with length 300 μm. New Oep is added to the surface with at constant rate k3, and Oep is internalized via constitutive endocytosis of both bound and unbound receptors. Unbound receptors can be recycled to the surface or degraded. Ligand-bound receptors are not recycled. In panels B and C, simulations are presented as kymographs; each image column shows the state of the system with the source at the bottom and animal pole at the top. Time proceeds from left to right. (B) Simulation of a wild-type gradient. With continual receptor replacement, the system achieves a steady state gradient with length scale set by the balance between ligand diffusion and capture. The free ligand, free receptor and receptor-ligand complex concentrations are plotted from left to right in red, cyan and magenta, respectively. (C) Simulation of gradient formation in a zygotic oep mutant. Simulation details are identical to (B), but with receptor replacement rate (k3) set to zero. The system fails to establish a steady state due to gradual consumption and degradation of receptors. As observed in the model presented in the main text, the Nodal ligand profile expands (red) to drive a propagating wave of signaling activity (magenta).

Acknowledgments
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