ZFIN is now using GRCz12tu for Genomic Data
Gene
nr1d2b
- ID
- ZDB-GENE-990415-244
- Name
- nuclear receptor subfamily 1, group D, member 2b
- Symbol
- nr1d2b Nomenclature History
- Previous Names
- Type
- protein_coding_gene
- Location
- Chr: 19 Mapping Details/Browsers
- Genome Assembly
- GRCz12tu
- Annotation Status
- Current
- Description
- Predicted to enable RNA polymerase II cis-regulatory region sequence-specific DNA binding activity and nuclear receptor activity. Predicted to be involved in several processes, including hormone-mediated signaling pathway; intracellular receptor signaling pathway; and regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of DNA-templated transcription. Predicted to be active in nucleus. Is expressed in nervous system; optic vesicle; and pharyngeal arch. Orthologous to human NR1D2 (nuclear receptor subfamily 1 group D member 2).
- Genome Resources
- Note
- None
- Comparative Information
-
- All Expression Data
- 14 figures from 6 publications
- Cross-Species Comparison
- High Throughput Data
- Thisse Expression Data
-
- af342942 (18 images)
Wild Type Expression Summary
- All Phenotype Data
- No data available
- Cross-Species Comparison
- Alliance
Phenotype Summary
Mutations
Human Disease
Domain, Family, and Site Summary
| Type | InterPro ID | Name |
|---|---|---|
| Domain | IPR000536 | Nuclear hormone receptor, ligand-binding domain |
| Domain | IPR001628 | Zinc finger, nuclear hormone receptor-type |
| Family | IPR001723 | Nuclear hormone receptor |
| Family | IPR050234 | Nuclear hormone receptor family NR1 subfamily |
| Homologous_superfamily | IPR013088 | Zinc finger, NHR/GATA-type |
| Homologous_superfamily | IPR035500 | Nuclear hormone receptor-like domain superfamily |
Domain Details Per Protein
| Protein | Additional Resources | Length | Nuclear hormone receptor | Nuclear hormone receptor family NR1 subfamily | Nuclear hormone receptor, ligand-binding domain | Nuclear hormone receptor-like domain superfamily | Zinc finger, NHR/GATA-type | Zinc finger, nuclear hormone receptor-type |
|---|---|---|---|---|---|---|---|---|
| UniProtKB:A0A8M2B6I7 | InterPro | 498 | ||||||
| UniProtKB:Q6GMI3 | InterPro | 578 |
- Genome Browsers
| Type | Name | Annotation Method | Has Havana Data | Length (nt) | Analysis |
|---|---|---|---|---|---|
| aberrant processed transcript |
nr1d2b-202
(1)
|
Ensembl | 900 nt | ||
| mRNA |
nr1d2b-203
(1)
|
Ensembl | 3,787 nt | ||
| ncRNA |
nr1d2b-003
(1)
|
Ensembl | 613 nt | ||
| ncRNA |
nr1d2b-004
(1)
|
Ensembl | 753 nt |
Interactions and Pathways
No data available
Plasmids
No data available
- Genome Browsers