Gene
si:dkey-239b22.1
- ID
- ZDB-GENE-131119-12
- Name
- si:dkey-239b22.1
- Symbol
- si:dkey-239b22.1 Nomenclature History
- Previous Names
-
- zmp:0000000578
- Type
- protein_coding_gene
- Location
- Chr: 12 Mapping Details/Browsers
- Description
- Predicted to act upstream of or within cell-matrix adhesion. Predicted to be located in plasma membrane.
- Genome Resources
- Note
- None
- Comparative Information
-
- All Expression Data
- No data available
- Cross-Species Comparison
- High Throughput Data
- Thisse Expression Data
- No data available
Wild Type Expression Summary
- All Phenotype Data
- No data available
- Cross-Species Comparison
- Alliance
Phenotype Summary
Mutations
Allele | Type | Localization | Consequence | Mutagen | Supplier |
---|---|---|---|---|---|
sa11301 | Allele with one point mutation | Unknown | Premature Stop | ENU | |
sa28005 | Allele with one point mutation | Unknown | Premature Stop | ENU | |
sa30965 | Allele with one point mutation | Unknown | Premature Stop | ENU | |
sa35365 | Allele with one point mutation | Unknown | Premature Stop | ENU | |
sa35366 | Allele with one point mutation | Unknown | Premature Stop | ENU | |
sa35367 | Allele with one point mutation | Unknown | Premature Stop | ENU | |
sa35368 | Allele with one point mutation | Unknown | Premature Stop | ENU | |
sa42089 | Allele with one point mutation | Unknown | Premature Stop | ENU | |
sa42090 | Allele with one point mutation | Unknown | Premature Stop | ENU | |
sa42091 | Allele with one point mutation | Unknown | Splice Site | ENU |
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No data available
Human Disease
Domain, Family, and Site Summary
Domain Details Per Protein
Protein | Additional Resources | Length | Alpha-tectorin | NIDO domain | Serine protease inhibitor-like superfamily | TILa domain | Trypsin Inhibitor-like, cysteine rich domain | von Willebrand factor, type D domain | VWFC domain | VWF/SSPO/Zonadhesin-like, cysteine-rich domain | Zona pellucida domain | Zona pellucida, ZP-C domain | ZP-C domain |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
UniProtKB:A0A8M3AYM0 | InterPro | 5336 | |||||||||||
UniProtKB:A0A8M6Z1G7 | InterPro | 3880 | |||||||||||
UniProtKB:A0A8M6Z9E8 | InterPro | 3880 |
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Type | Name | Annotation Method | Has Havana Data | Length (nt) | Analysis |
---|---|---|---|---|---|
mRNA |
si:dkey-239b22.1-201
(1)
|
Ensembl | 16,334 nt | ||
mRNA |
si:dkey-239b22.1-202
(1)
|
Ensembl | 3,233 nt |
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Interactions and Pathways
No data available
Plasmids
No data available
No data available
Relationship | Marker Type | Marker | Accession Numbers | Citations |
---|---|---|---|---|
Contained in | BAC | CH73-181M17 | ZFIN Curated Data | |
Contained in | BAC | CH211-39F2 | ZFIN Curated Data |
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Type | Accession # | Sequence | Length (nt/aa) | Analysis |
---|---|---|---|---|
RNA | RefSeq:XM_017358564 (1) | 16355 nt | ||
Genomic | GenBank:CR450815 (1) | 171669 nt | ||
Polypeptide | UniProtKB:A0A8M3AYM0 (2) | 5336 aa |
No data available
- Elkon, R., Milon, B., Morrison, L., Shah, M., Vijayakumar, S., Racherla, M., Leitch, C.C., Silipino, L., Hadi, S., Weiss-Gayet, M., Barras, E., Schmid, C.D., Ait-Lounis, A., Barnes, A., Song, Y., Eisenman, D.J., Eliyahu, E., Frolenkov, G.I., Strome, S.E., Durand, B., Zaghloul, N.A., Jones, S.M., Reith, W., Hertzano, R. (2015) RFX transcription factors are essential for hearing in mice. Nature communications. 6:8549
- Marquart, G.D., Tabor, K.M., Brown, M., Strykowski, J.L., Varshney, G.K., LaFave, M.C., Mueller, T., Burgess, S.M., Higashijima, S., Burgess, H.A. (2015) A 3D Searchable Database of Transgenic Zebrafish Gal4 and Cre Lines for Functional Neuroanatomy Studies. Frontiers in neural circuits. 9:78
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