Gene

caln1

ID

ZDB-GENE-130313-1

Name

calneuron 1

Symbol

caln1 Nomenclature History

Previous Names

cabp8a (1)
si:dkeyp-108d9.1

Type

protein_coding_gene

Location

Chr: 15 Mapping Details/Browsers

Description

Predicted to have calcium ion binding activity. Predicted to localize to integral component of membrane. Is expressed in brain; pronephric duct; retinal ganglion cell layer; and spinal cord. Orthologous to human CALN1 (calneuron 1).

Genome Resources

Note

None

Comparative Information

Expression

All Expression Data

1 figure from Di Donato et al., 2013

Cross-Species Comparison

High Throughput Data

Expression Atlas

UO scRNA-seq (UCSC browser)

Single Cell Expression Atlas

Thisse Expression Data

No data available

Wild Type Expression Summary

Phenotype

All Phenotype Data: No data available
Cross-Species Comparison: Alliance

Phenotype Summary

Mutations

Mutants

Sequence Targeting Reagents

Human Disease

Associated With caln1 Human Ortholog

No data available

Associated With caln1 Via Experimental Models

No data available

Gene Ontology

Protein Domains

Domain, Family, and Site Summary

Type	InterPro ID	Name
Binding_site	IPR018247	EF-Hand 1, calcium-binding site
Conserved_site	IPR001751	S100/Calcium binding protein 7/8-like, conserved site
Domain	IPR002048	EF-hand domain
Homologous_superfamily	IPR011992	EF-hand domain pair

Domain Details Per Protein

Protein	Length	EF-Hand 1, calcium-binding site	EF-hand domain	EF-hand domain pair	S100/Calcium binding protein 7/8-like, conserved site
UniProtKB:X1WE84 InterPro	219
UniProtKB:A0A8M9PIG6 InterPro	262

Transcripts

Genome Browsers

NCBI

Ensembl

ZFIN

Type	Name	Annotation Method	Length (nt)	Analysis
mRNA	caln1-201 (1) Ensembl	Havana	2441 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT

Interactions and Pathways

No data available

Antibodies

No data available

Plasmids

No data available

Constructs

Marker Relationships

Sequences

Orthology

Comparative Orthology: Alliance
Gene Tree: Ensembl

Citations