Gene

jmjd1cb

ID
ZDB-GENE-121214-344
Name
jumonji domain containing 1Cb
Symbol
jmjd1cb Nomenclature History
Previous Names
  • si:dkey-204n14.2
  • zmp:0000000876 (1)
Type
protein_coding_gene
Location
Chr: 12 Mapping Details/Browsers
Description
Predicted to enable chromatin DNA binding activity; histone H3K9 demethylase activity; and transcription coregulator activity. Acts upstream of or within myeloid cell development. Predicted to be located in nucleus. Predicted to be part of histone deacetylase complex. Predicted to be active in chromatin. Orthologous to human JMJD1C (jumonji domain containing 1C).
Genome Resources
Note
None
Comparative Information
Expression
All Expression Data
No data available
Cross-Species Comparison
High Throughput Data
Thisse Expression Data
No data available
Wild Type Expression Summary
Phenotype
All Phenotype Data
1 Figure from Gieger et al., 2011
Cross-Species Comparison
Alliance
Phenotype Summary
Mutations
Mutants
Allele Type Localization Consequence Mutagen Supplier
sa6235Allele with one point mutationUnknownPremature StopENU
sa11812Allele with one point mutationUnknownPremature StopENU
sa15925Allele with one point mutationUnknownPremature StopENU
sa18109Allele with one point mutationUnknownPremature StopENU
sa22034Allele with one point mutationUnknownPremature StopENU
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Sequence Targeting Reagents
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Human Disease
Associated With jmjd1cb Human Ortholog
No data available
Associated With jmjd1cb Via Experimental Models
No data available
Gene Ontology
Protein Domains
Domain, Family, and Site Summary
Type InterPro ID Name
Domain IPR003347 JmjC domain
Domain IPR054294 Domain of unknown function DUF7030
Domain IPR054503 Lysine-specific demethylase 3A/B, tudor domain
Domain IPR054504 Lysine-specific demethylase 3B, PWWP domain
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Domain Details Per Protein
Protein Additional Resources Length Domain of unknown function DUF7030 JmjC domain Lysine-specific demethylase 3A/B, tudor domain Lysine-specific demethylase 3B, PWWP domain
UniProtKB:A0A8M3B798 InterPro 2554
UniProtKB:A0A8M3BE19 InterPro 2568
UniProtKB:A0A8M6Z3J7 InterPro 2398
UniProtKB:A0A8M2B2R0 InterPro 2558
UniProtKB:A0A8M3B4G8 InterPro 2543
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Transcripts
Genome Browsers
Genome Build: GRCz11Chromosome: 12
Type Name Annotation Method Has Havana Data Length (nt) Analysis
mRNA jmjd1cb-201 (1) Ensembl 8,751 nt
mRNA jmjd1cb-203 (1) Ensembl 7,575 nt
ncRNA jmjd1cb-002 (1) Ensembl 783 nt
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Interactions and Pathways
No data available
Antibodies
No data available
Plasmids
No data available
Constructs
No data available
Marker Relationships
Relationship Marker Type Marker Accession Numbers Citations
Contained inBACCH211-101C7ZFIN Curated Data
Contained inBACDKEY-204N14ZFIN Curated Data
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Sequences
Orthology
Comparative Orthology
Alliance
Species Symbol Chromosome Accession # Evidence
HumanJMJD1C10
Conserved genome location (synteny) (1)
Amino acid sequence comparison (1)
MouseJmjd1c10
Amino acid sequence comparison (1)
Conserved genome location (synteny) (1)
Citations
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