Gene
slc38a8a
- ID
- ZDB-GENE-121005-5
- Name
- solute carrier family 38 member 8a
- Symbol
- slc38a8a Nomenclature History
- Previous Names
-
- slc38a8
- zmp:0000000533
- zmp:0000001044
- Type
- protein_coding_gene
- Location
- Chr: 18 Mapping Details/Browsers
- Description
- Predicted to enable L-amino acid transmembrane transporter activity. Predicted to be involved in amino acid transmembrane transport. Predicted to be active in membrane. Human ortholog(s) of this gene implicated in foveal hypoplasia 2. Orthologous to human SLC38A8 (solute carrier family 38 member 8).
- Genome Resources
- Note
- None
- Comparative Information
-
- All Expression Data
- No data available
- Cross-Species Comparison
- High Throughput Data
- Thisse Expression Data
- No data available
Wild Type Expression Summary
- All Phenotype Data
- No data available
- Cross-Species Comparison
- Alliance
Phenotype Summary
Mutations
Human Disease
| Disease Ontology Term | Multi-Species Data | OMIM Term | OMIM Phenotype ID |
|---|---|---|---|
| foveal hypoplasia 2 | Alliance | Foveal hypoplasia 2, with or without optic nerve misrouting and/or anterior segment dysgenesis | 609218 |
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Domain, Family, and Site Summary
| Type | InterPro ID | Name |
|---|---|---|
| Domain | IPR013057 | Amino acid transporter, transmembrane domain |
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Domain Details Per Protein
| Protein | Additional Resources | Length | Amino acid transporter, transmembrane domain |
|---|---|---|---|
| UniProtKB:A0A0G2KE96 | InterPro | ||
| UniProtKB:F1QK49 | InterPro | 441 | |
| UniProtKB:A5WVQ9 | InterPro | 441 |
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- Genome Browsers
| Type | Name | Annotation Method | Has Havana Data | Length (nt) | Analysis |
|---|---|---|---|---|---|
| mRNA |
slc38a8a-201
(1)
|
Ensembl | 1,480 nt |
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Interactions and Pathways
No data available
Plasmids
No data available
| Relationship | Marker Type | Marker | Accession Numbers | Citations |
|---|---|---|---|---|
| Contained in | BAC | CH211-163B1 | ||
| Contained in | BAC | CH211-267G5 |
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| Type | Accession # | Sequence | Length (nt/aa) | Analysis |
|---|---|---|---|---|
| RNA | RefSeq:NM_001144815 (1) | |||
| Genomic | GenBank:CT025908 | 176269 nt | ||
| Polypeptide | UniProtKB:A5WVQ9 (1) | 441 aa |
- Comparative Orthology
- Alliance
- Braasch, I., Gehrke, A.R., Smith, J.J., Kawasaki, K., Manousaki, T., Pasquier, J., Amores, A., Desvignes, T., Batzel, P., Catchen, J., Berlin, A.M., Campbell, M.S., Barrell, D., Martin, K.J., Mulley, J.F., Ravi, V., Lee, A.P., Nakamura, T., Chalopin, D., Fan, S., Wcisel, D., Cañestro, C., Sydes, J., Beaudry, F.E., Sun, Y., Hertel, J., Beam, M.J., Fasold, M., Ishiyama, M., Johnson, J., Kehr, S., Lara, M., Letaw, J.H., Litman, G.W., Litman, R.T., Mikami, M., Ota, T., Saha, N.R., Williams, L., Stadler, P.F., Wang, H., Taylor, J.S., Fontenot, Q., Ferrara, A., Searle, S.M., Aken, B., Yandell, M., Schneider, I., Yoder, J.A., Volff, J.N., Meyer, A., Amemiya, C.T., Venkatesh, B., Holland, P.W., Guiguen, Y., Bobe, J., Shubin, N.H., Di Palma, F., Alföldi, J., Lindblad-Toh, K., Postlethwait, J.H. (2016) The spotted gar genome illuminates vertebrate evolution and facilitates human-teleost comparisons. Nature Genetics. 48(4):427-37
- Teoh, S.L., Ogawa, S., Parhar, I.S. (2015) Localization of Genes Encoding Metallothionein-like Protein (mt2 and smtb) in the Brain of Zebrafish. Journal of chemical neuroanatomy. 70:20-32
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