Gene

pcif1

ID
ZDB-GENE-120920-2
Name
phosphorylated CTD interacting factor 1
Symbol
pcif1 Nomenclature History
Previous Names
None
Type
protein_coding_gene
Location
Chr: 6 Mapping Details/Browsers
Description
Enables S-adenosyl-L-methionine binding activity and mRNA (2'-O-methyladenosine-N6-)-methyltransferase activity. Involved in mRNA processing. Predicted to be active in nucleus. Orthologous to human PCIF1 (phosphorylated CTD interacting factor 1).
Genome Resources
Note
None
Comparative Information
Expression
All Expression Data
No data available
Cross-Species Comparison
High Throughput Data
Thisse Expression Data
No data available
Wild Type Expression Summary
Phenotype
All Phenotype Data
No data available
Cross-Species Comparison
Alliance
Phenotype Summary
Mutations
Mutants
Allele Type Localization Consequence Mutagen Supplier
sa2316Allele with one point mutationUnknownPremature StopENU
sa40806Allele with one point mutationUnknownPremature StopENU
1 - 2 of 2
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Sequence Targeting Reagents
No data available
Human Disease
Associated With pcif1 Human Ortholog
No data available
Associated With pcif1 Via Experimental Models
No data available
Gene Ontology
Protein Domains
Domain, Family, and Site Summary
Type InterPro ID Name
Domain IPR001202 WW domain
Domain IPR022035 PCIF1, WW domain
Family IPR039881 mRNA (2'-O-methyladenosine-N(6)-)-methyltransferase PCIF1-like
Homologous_superfamily IPR029048 Heat shock protein 70kD, C-terminal domain superfamily
Homologous_superfamily IPR036020 WW domain superfamily
1 - 5 of 5
Domain Details Per Protein
Protein Additional Resources Length Heat shock protein 70kD, C-terminal domain superfamily mRNA (2'-O-methyladenosine-N(6)-)-methyltransferase PCIF1-like PCIF1, WW domain WW domain WW domain superfamily
UniProtKB:A0AB13AB81 InterPro 721
UniProtKB:A0A0R4IKJ1 InterPro PDB 721
1 - 2 of 2
Transcripts
Genome Browsers
Genome Build: GRCz11Chromosome: 6
Type Name Annotation Method Has Havana Data Length (nt) Analysis
mRNA pcif1-201 (1) Ensembl 3,273 nt
mRNA pcif1-202 (1) Ensembl 2,166 nt
1 - 2 of 2
Interactions and Pathways
No data available
Antibodies
No data available
Plasmids
No data available
Constructs
No data available
Marker Relationships
Relationship Marker Type Marker Accession Numbers Citations
Contained inFosmidCH1073-250A3ZFIN Curated Data
1 - 1 of 1
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Sequences
Orthology
Comparative Orthology
Alliance
Gene Tree
Ensembl
Species Symbol Chromosome Accession # Evidence
HumanPCIF120
Conserved genome location (synteny) (1)
Amino acid sequence comparison (1)
MousePcif12
Amino acid sequence comparison (1)
Conserved genome location (synteny) (1)
Citations