ZFIN is now using GRCz12tu for Genomic Data
Gene
rbfox3a
- ID
- ZDB-GENE-111213-1
- Name
- RNA binding fox-1 homolog 3a
- Symbol
- rbfox3a Nomenclature History
- Previous Names
-
- rbfox3
- neun (1)
- Type
- protein_coding_gene
- Location
- Chr: 12 Mapping Details/Browsers
- Genome Assembly
- GRCz12tu
- Annotation Status
- Current
- Description
- Predicted to enable mRNA binding activity. Predicted to be involved in nervous system development and regulation of alternative mRNA splicing, via spliceosome. Predicted to act upstream of or within RNA splicing; mRNA processing; and regulation of RNA splicing. Located in nucleus. Is expressed in brain; heart; and spinal cord. Orthologous to human RBFOX3 (RNA binding fox-1 homolog 3).
- Genome Resources
- Note
- None
- Comparative Information
-
- All Expression Data
- 5 figures from 5 publications
- Cross-Species Comparison
- High Throughput Data
- Thisse Expression Data
- No data available
Wild Type Expression Summary
- All Phenotype Data
- No data available
- Cross-Species Comparison
- Alliance
Phenotype Summary
Mutations
Human Disease
Domain, Family, and Site Summary
| Type | InterPro ID | Name |
|---|---|---|
| Domain | IPR000504 | RNA recognition motif domain |
| Domain | IPR025670 | Fox-1 C-terminal domain |
| Domain | IPR034237 | FOX1, RNA recognition motif |
| Family | IPR017325 | RNA binding protein fox-1 homolog 1-3 |
| Family | IPR047131 | RNA binding protein fox-1 homolog 1-like |
| Homologous_superfamily | IPR012677 | Nucleotide-binding alpha-beta plait domain superfamily |
| Homologous_superfamily | IPR035979 | RNA-binding domain superfamily |
Domain Details Per Protein
| Protein | Additional Resources | Length | Fox-1 C-terminal domain | FOX1, RNA recognition motif | Nucleotide-binding alpha-beta plait domain superfamily | RNA-binding domain superfamily | RNA binding protein fox-1 homolog 1-3 | RNA binding protein fox-1 homolog 1-like | RNA recognition motif domain |
|---|---|---|---|---|---|---|---|---|---|
| UniProtKB:A0A8M9QES8 | InterPro | 411 | |||||||
| UniProtKB:A0A8M9QET1 | InterPro | 345 | |||||||
| UniProtKB:A0A8M9PX73 | InterPro | 381 | |||||||
| UniProtKB:A0A8M9QN15 | InterPro | 387 | |||||||
| UniProtKB:A0A8M9Q953 | InterPro | 345 | |||||||
| UniProtKB:A0A8M9Q950 | InterPro | 415 | |||||||
| UniProtKB:A0A8M9PX69 | InterPro | 428 | |||||||
| UniProtKB:A0A8M9QJ91 | InterPro | 429 | |||||||
| UniProtKB:A0AB32TYJ8 | InterPro | 380 | |||||||
| UniProtKB:A0AB32TYK8 | InterPro | 383 | |||||||
| UniProtKB:A0AB32U0V9 | InterPro | 398 | |||||||
| UniProtKB:A0AB32U1P3 | InterPro | 397 | |||||||
| UniProtKB:A0AB32U4R0 | InterPro | 384 |
- Genome Browsers
| Type | Name | Annotation Method | Has Havana Data | Length (nt) | Analysis |
|---|---|---|---|---|---|
| mRNA |
rbfox3a-201
(1)
|
Ensembl | 1,104 nt | ||
| mRNA |
rbfox3a-202
(1)
|
Ensembl | 7,208 nt | ||
| mRNA |
rbfox3a-203
(1)
|
Ensembl | 1,589 nt |
Interactions and Pathways
No data available
Plasmids
No data available
- Genome Browsers