Gene
glipr1a
- ID
- ZDB-GENE-110309-2
- Name
- GLI pathogenesis-related 1a
- Symbol
- glipr1a Nomenclature History
- Previous Names
- None
- Type
- protein_coding_gene
- Location
- Chr: 4 Mapping Details/Browsers
- Description
- Predicted to be located in membrane. Predicted to be active in extracellular space. Orthologous to several human genes including GLIPR1 (GLI pathogenesis related 1).
- Genome Resources
- Note
- None
- Comparative Information
-
- All Expression Data
- No data available
- Cross-Species Comparison
- High Throughput Data
- Thisse Expression Data
- No data available
Wild Type Expression Summary
- All Phenotype Data
- No data available
- Cross-Species Comparison
- Alliance
Phenotype Summary
Mutations
| Allele | Type | Localization | Consequence | Mutagen | Supplier |
|---|---|---|---|---|---|
| sa17196 | Allele with one point mutation | Unknown | Premature Stop | ENU |
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No data available
Human Disease
Domain, Family, and Site Summary
| Type | InterPro ID | Name |
|---|---|---|
| Conserved_site | IPR018244 | Allergen V5/Tpx-1-related, conserved site |
| Domain | IPR014044 | CAP domain |
| Domain | IPR034121 | Glioma pathogenesis-related protein 1-like, SCP domain |
| Family | IPR001283 | Cysteine-rich secretory protein-related |
| Family | IPR002413 | Venom allergen 5-like |
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Domain Details Per Protein
| Protein | Additional Resources | Length | Allergen V5/Tpx-1-related, conserved site | CAP domain | CAP superfamily | Cysteine-rich secretory protein-related | Glioma pathogenesis-related protein 1-like, SCP domain | Venom allergen 5-like |
|---|---|---|---|---|---|---|---|---|
| UniProtKB:A0A8M9PHP4 | InterPro | 260 | ||||||
| UniProtKB:A0A8M6YY67 | InterPro | 269 | ||||||
| UniProtKB:A0AB32TTR6 | InterPro | 242 |
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| Type | Name | Annotation Method | Has Havana Data | Length (nt) | Analysis |
|---|---|---|---|---|---|
| mRNA |
glipr1a-201
(1)
|
Ensembl | 768 nt | ||
| mRNA |
glipr1a-202
(1)
|
Ensembl | 828 nt |
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Interactions and Pathways
No data available
Plasmids
No data available
No data available
| Relationship | Marker Type | Marker | Accession Numbers | Citations |
|---|---|---|---|---|
| Contained in | BAC | CH73-89B15 | ZFIN Curated Data | |
| Contained in | BAC | CH73-278M9 | ZFIN Curated Data |
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| Type | Accession # | Sequence | Length (nt/aa) | Analysis |
|---|---|---|---|---|
| RNA | RefSeq:XM_017355245 (1) | 1067 nt | ||
| Genomic | GenBank:CU694324 (1) | 97834 nt | ||
| Polypeptide | UniProtKB:A0A8M6YY67 (1) | 269 aa |
- Comparative Orthology
- Alliance
- Sun, S., Li, X., Liu, Z., Zhang, G., Yang, C., Jiang, Q., Zou, Y. (2019) Expression of nucleosome assembly protein 1 like genes in zebrafish embryos. Gene expression patterns : GEP. 35:119076
- Wang, H., Meng, Z., Liu, F., Zhou, L., Su, M., Meng, Y., Zhang, S., Liao, X., Cao, Z., Lu, H. (2019) Characterization of boscalid-induced oxidative stress and neurodevelopmental toxicity in zebrafish embryos. Chemosphere. 238:124753
- Braasch, I., Gehrke, A.R., Smith, J.J., Kawasaki, K., Manousaki, T., Pasquier, J., Amores, A., Desvignes, T., Batzel, P., Catchen, J., Berlin, A.M., Campbell, M.S., Barrell, D., Martin, K.J., Mulley, J.F., Ravi, V., Lee, A.P., Nakamura, T., Chalopin, D., Fan, S., Wcisel, D., Cañestro, C., Sydes, J., Beaudry, F.E., Sun, Y., Hertel, J., Beam, M.J., Fasold, M., Ishiyama, M., Johnson, J., Kehr, S., Lara, M., Letaw, J.H., Litman, G.W., Litman, R.T., Mikami, M., Ota, T., Saha, N.R., Williams, L., Stadler, P.F., Wang, H., Taylor, J.S., Fontenot, Q., Ferrara, A., Searle, S.M., Aken, B., Yandell, M., Schneider, I., Yoder, J.A., Volff, J.N., Meyer, A., Amemiya, C.T., Venkatesh, B., Holland, P.W., Guiguen, Y., Bobe, J., Shubin, N.H., Di Palma, F., Alföldi, J., Lindblad-Toh, K., Postlethwait, J.H. (2016) The spotted gar genome illuminates vertebrate evolution and facilitates human-teleost comparisons. Nature Genetics. 48(4):427-37
- Elkon, R., Milon, B., Morrison, L., Shah, M., Vijayakumar, S., Racherla, M., Leitch, C.C., Silipino, L., Hadi, S., Weiss-Gayet, M., Barras, E., Schmid, C.D., Ait-Lounis, A., Barnes, A., Song, Y., Eisenman, D.J., Eliyahu, E., Frolenkov, G.I., Strome, S.E., Durand, B., Zaghloul, N.A., Jones, S.M., Reith, W., Hertzano, R. (2015) RFX transcription factors are essential for hearing in mice. Nature communications. 6:8549
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