Gene
parietopsin
- ID
- ZDB-GENE-101129-2
- Name
- parietopsin
- Symbol
- parietopsin Nomenclature History
- Previous Names
-
- si:ch211-68a17.4
- Type
- protein_coding_gene
- Location
- Chr: 25 Mapping Details/Browsers
- Description
- Predicted to enable G protein-coupled serotonin receptor activity and neurotransmitter receptor activity. Predicted to be involved in G protein-coupled receptor signaling pathway, coupled to cyclic nucleotide second messenger; adenylate cyclase-inhibiting serotonin receptor signaling pathway; and chemical synaptic transmission. Predicted to act upstream of or within G protein-coupled receptor signaling pathway and phototransduction. Predicted to be located in membrane. Predicted to be active in dendrite and plasma membrane. Is expressed in brain; epiphysis; fin; heart; and testis.
- Genome Resources
- Note
- None
- Comparative Information
-
- All Expression Data
- 3 figures from 3 publications
- Cross-Species Comparison
- High Throughput Data
- Thisse Expression Data
- No data available
Wild Type Expression Summary
- All Phenotype Data
- No data available
- Cross-Species Comparison
- Alliance
Phenotype Summary
Mutations
Allele | Type | Localization | Consequence | Mutagen | Supplier |
---|---|---|---|---|---|
zf3022 | Allele with one insertion | Unknown | Unknown | CRISPR |
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Human Disease
Domain, Family, and Site Summary
Domain Details Per Protein
Protein | Additional Resources | Length | GPCR, rhodopsin-like, 7TM | G-protein coupled receptor opsins | G protein-coupled receptor, rhodopsin-like | Prostanoid receptor | Visual pigments (opsins) retinal binding site |
---|---|---|---|---|---|---|---|
UniProtKB:F1QYR6 | InterPro | 336 | |||||
UniProtKB:A0A0R4ICV1 | InterPro | 641 |
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Type | Name | Annotation Method | Has Havana Data | Length (nt) | Analysis |
---|---|---|---|---|---|
mRNA |
parietopsin-201
(1)
|
Ensembl | 1,148 nt | ||
mRNA |
parietopsin-202
(1)
|
Ensembl | 921 nt |
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Interactions and Pathways
No data available
Plasmids
No data available
Construct | Regulatory Region | Coding Sequence | Species | Tg Lines | Citations |
---|---|---|---|---|---|
Tg(-2.2parietopsin:CFP) |
|
| 1 | Cau et al., 2019 |
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Relationship | Marker Type | Marker | Accession Numbers | Citations |
---|---|---|---|---|
Contained in | BAC | CH211-68A17 | ||
Contained in | BAC | DKEY-218L23 |
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Type | Accession # | Sequence | Length (nt/aa) | Analysis |
---|---|---|---|---|
RNA | RefSeq:NM_001328157 (1) | 1148 nt | ||
Genomic | GenBank:BX897714 | 184435 nt | ||
Polypeptide | UniProtKB:A0A0R4ICV1 (1) | 641 aa |
No data available
- Liang, Q., Afriyie, G., Chen, Z., Xu, Z., Dong, Z., Wang, Z., Guo, Y. (2021) Analysis of Opsin Gene Family of Crimson Snapper (Lutjanus erythropterus). Gene. 807:145960
- Wada, S., Kawano-Yamashita, E., Sugihara, T., Tamotsu, S., Koyanagi, M., Terakita, A. (2021) Insights into the evolutionary origin of the pineal color discrimination mechanism from the river lamprey. BMC Biology. 19:188
- Steindal, I.A.F., Whitmore, D. (2020) Zebrafish Circadian Clock Entrainment and the Importance of Broad Spectral Light Sensitivity. Frontiers in Physiology. 11:1002
- Cau, E., Ronsin, B., Bessière, L., Blader, P. (2019) A Notch-mediated, temporal asymmetry in BMP pathway activation promotes photoreceptor subtype diversification. PLoS Biology. 17:e2006250
- Wada, S., Shen, B., Kawano-Yamashita, E., Nagata, T., Hibi, M., Tamotsu, S., Koyanagi, M., Terakita, A. (2018) Color opponency with a single kind of bistable opsin in the zebrafish pineal organ. Proceedings of the National Academy of Sciences of the United States of America. 115(44):11310-11315
- Davies, W.I., Tamai, T.K., Zheng, L., Fu, J.K., Rihel, J., Foster, R.G., Whitmore, D., Hankins, M.W. (2015) An extended family of novel vertebrate photopigments is widely expressed and displays a diversity of function. Genome research. 25(11):1666-79
- Koyanagi, M., Wada, S., Kawano-Yamashita, E., Hara, Y., Kuraku, S., Kosaka, S., Kawakami, K., Tamotsu, S., Tsukamoto, H., Shichida, Y., Terakita, A. (2015) Diversification of non-visual photopigment parapinopsin in spectral sensitivity for diverse pineal functions. BMC Biology. 13:73
- Shiraki, T., Kojima, D., and Fukada, Y. (2010) Light-induced body color change in developing zebrafish. Photochemical & photobiological sciences : Official journal of the European Photochemistry Association and the European Society for Photobiology. 9(11):1498-1504
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