ZFIN is now using GRCz12tu for Genomic Data
Gene

rbm11

ID
ZDB-GENE-091204-317
Name
RNA binding motif protein 11
Symbol
rbm11 Nomenclature History
Previous Names
  • si:dkey-71d15.3
Type
protein_coding_gene
Location
Chr: 21 Mapping Details/Browsers
Genome Assembly
GRCz12tu
Annotation Status
Current
Description
Predicted to enable single-stranded RNA binding activity. Predicted to be involved in regulation of alternative mRNA splicing, via spliceosome. Predicted to be located in nucleoplasm. Predicted to be active in nucleus. Orthologous to human RBM11 (RNA binding motif protein 11).
Genome Resources
Note
None
Comparative Information
Expression
All Expression Data
No data available
Cross-Species Comparison
High Throughput Data
Thisse Expression Data
No data available
Wild Type Expression Summary
Phenotype
All Phenotype Data
No data available
Cross-Species Comparison
Alliance
Phenotype Summary
Mutations
Mutants
Allele Type Localization Consequence Mutagen Supplier
sa16126Allele with one point mutationUnknownPremature StopENU
European Zebrafish Resource Center (EZRC) (order this)
Zebrafish International Resource Center (ZIRC) (order this)
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Sequence Targeting Reagents
No data available
Human Disease
Associated With rbm11 Human Ortholog
No data available
Associated With rbm11 Via Experimental Models
No data available
Gene Ontology
Protein Domains
Domain, Family, and Site Summary
Type InterPro ID Name
Domain IPR000504 RNA recognition motif domain
Family IPR052285 Nuclear exosome targeting complex subunit
Homologous_superfamily IPR012677 Nucleotide-binding alpha-beta plait domain superfamily
Homologous_superfamily IPR035979 RNA-binding domain superfamily
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Domain Details Per Protein
Protein Additional Resources Length Nuclear exosome targeting complex subunit Nucleotide-binding alpha-beta plait domain superfamily RNA-binding domain superfamily RNA recognition motif domain
UniProtKB:A0A8M3ALR0 InterPro 206
UniProtKB:A0A8M1RFR7 InterPro 212
UniProtKB:A0AB13A7W2 InterPro 212
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Transcripts
Genome Browsers
Genome Assembly: GRCz11Chromosome: 21
Type Name Annotation Method Has Havana Data Length (nt) Analysis
mRNA rbm11-201 (1)
Ensembl
Ensembl 393 nt
ZFIN BLAST
mRNA rbm11-202 (1)
Ensembl
Ensembl 900 nt
ZFIN BLAST
mRNA rbm11-203 (1)
Ensembl
Ensembl 3,303 nt
ZFIN BLAST
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Interactions and Pathways
No data available
Antibodies
No data available
Plasmids
Constructs
No data available
Marker Relationships
Relationship Marker Type Marker Accession Numbers Citations
Contained inBACDKEY-71D15ZFIN Curated Data
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Sequences
Genome Browsers
Genome Assembly: GRCz12tuChromosome: 21
Type Accession # Genome Assembly Length (nt/aa) Analysis
RNARefSeq:NM_001386367 (1)
ZFIN BLASTNCBI BLASTMegaBLASTEnsemblUCSC BLAT
GenomicGenBank:CR388019 (1)68996 nt
MegaBLASTEnsembl
PolypeptideUniProtKB:A0A8M1RFR7 (1)212 aa
ZFIN BLASTSIB BLASTEnsembl Protein Blast
Orthology
Comparative Orthology
Alliance
Gene Tree
Ensembl
Species Symbol Chromosome Accession # Evidence
HumanRBM1121
Conserved genome location (synteny) (1)
Amino acid sequence comparison (1)
MouseRbm1116
Conserved genome location (synteny) (1)
Amino acid sequence comparison (1)
Citations
TSV
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