Gene

trim35-9

ID
ZDB-GENE-091112-11
Name
tripartite motif containing 35-9
Symbol
trim35-9 Nomenclature History
Previous Names
  • si:ch73-379f5.2 (1)
  • zgc:113250
Type
protein_coding_gene
Location
Chr: 3 Mapping Details/Browsers
Description
Predicted to enable ubiquitin protein ligase activity. Predicted to be involved in innate immune response. Predicted to be active in cytoplasm. Orthologous to human TRIM35 (tripartite motif containing 35).
Genome Resources
Note
None
Comparative Information
Expression
All Expression Data
No data available
Cross-Species Comparison
High Throughput Data
Thisse Expression Data
No data available
Wild Type Expression Summary
Phenotype
All Phenotype Data
No data available
Cross-Species Comparison
Alliance
Phenotype Summary
Mutations
Mutants
Allele Type Localization Consequence Mutagen Supplier
sa40000Allele with one point mutationUnknownSplice SiteENU
Zebrafish International Resource Center (ZIRC) (order this)
European Zebrafish Resource Center (EZRC) (order this)
1 - 1 of 1
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Sequence Targeting Reagents
No data available
Human Disease
Associated With trim35-9 Human Ortholog
No data available
Associated With trim35-9 Via Experimental Models
No data available
Gene Ontology
Protein Domains
Domain, Family, and Site Summary
Type InterPro ID Name
Domain IPR000315 B-box-type zinc finger
Domain IPR001870 B30.2/SPRY domain
Domain IPR003877 SPRY domain
Domain IPR003879 Butyrophylin-like, SPRY domain
Domain IPR006574 SPRY-associated
1 - 5 of 8 Show all
Domain Details Per Protein
Protein Additional Resources Length B30.2/SPRY domain B30.2/SPRY domain superfamily B-box-type zinc finger Butyrophylin-like, SPRY domain Concanavalin A-like lectin/glucanase domain superfamily SPRY-associated SPRY domain Tripartite motif-containing
UniProtKB:Q58EJ1 InterPro 373
UniProtKB:A0AB13A8Y3 InterPro 373
UniProtKB:A0AB32TDB8 InterPro 408
1 - 3 of 3
Transcripts
Genome Browsers
Type Name Annotation Method Has Havana Data Length (nt) Analysis
mRNA trim35-9-201 (1)
Ensembl
Ensembl 1,305 nt
ZFIN BLAST
mRNA trim35-9-202 (1)
Ensembl
Ensembl 2,178 nt
ZFIN BLAST
1 - 2 of 2
Interactions and Pathways
No data available
Antibodies
No data available
Plasmids
No data available
Constructs
No data available
Marker Relationships
Relationship Marker Type Marker Accession Numbers Citations
Contained inBACCH73-379F5ZFIN Curated Data
EncodescDNAMGC:113250ZFIN Curated Data
1 - 2 of 2
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Sequences
Type Accession # Sequence Length (nt/aa) Analysis
RNARefSeq:NM_001014360 (1)2233 nt
ZFIN BLASTNCBI BLASTEnsemblUCSC BLAT
GenomicGenBank:CU855818 (1)67068 nt
MegaBLASTEnsembl
PolypeptideUniProtKB:A0AB32TDB8 (1)408 aa
ZFIN BLASTSIB BLASTEnsembl Protein Blast
Orthology
Comparative Orthology
Alliance
Gene Tree
Ensembl
No data available
Citations
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