ZFIN is now using GRCz12tu for Genomic Data
Gene
pcdh1b
- ID
- ZDB-GENE-091015-2
- Name
- protocadherin 1b
- Symbol
- pcdh1b Nomenclature History
- Previous Names
-
- pcdh1 (1)
- Type
- protein_coding_gene
- Location
- Chr: 14 Mapping Details/Browsers
- Genome Assembly
- GRCz12tu
- Annotation Status
- Current
- Description
- Predicted to enable cell adhesion molecule binding activity. Predicted to be involved in cell adhesion. Predicted to act upstream of or within homophilic cell-cell adhesion. Predicted to be located in membrane. Predicted to be active in plasma membrane. Is expressed in nervous system. Human ortholog(s) of this gene implicated in asthma; atopic dermatitis; and intrinsic asthma. Orthologous to human PCDH1 (protocadherin 1).
- Genome Resources
- Note
- None
- Comparative Information
-
- All Expression Data
- 5 figures from Blevins et al., 2011
- Cross-Species Comparison
- High Throughput Data
- Thisse Expression Data
- No data available
Wild Type Expression Summary
- All Phenotype Data
- No data available
- Cross-Species Comparison
- Alliance
Phenotype Summary
Mutations
Human Disease
Domain, Family, and Site Summary
Domain Details Per Protein
| Protein | Additional Resources | Length | Cadherin conserved site | Cadherin-like | Cadherin-like superfamily | Protocadherin | Protocadherin/Cadherin-related Cell Adhesion |
|---|---|---|---|---|---|---|---|
| UniProtKB:E7F376 | InterPro | 1093 | |||||
| UniProtKB:A0A8M3AI27 | InterPro | 1211 | |||||
| UniProtKB:A0A8M9Q1N5 | InterPro | 1064 | |||||
| UniProtKB:A0A140LGZ8 | InterPro | 1093 | |||||
| UniProtKB:A0AC58H8A1 | InterPro | 1211 | |||||
| UniProtKB:A0AC58H8B2 | InterPro | 1064 |
- Genome Browsers
| Type | Name | Annotation Method | Has Havana Data | Length (nt) | Analysis |
|---|---|---|---|---|---|
| mRNA |
pcdh1b-201
(1)
|
Ensembl | 4,563 nt | ||
| mRNA |
pcdh1b-202
(1)
|
Ensembl | 6,717 nt |
Interactions and Pathways
No data available
Plasmids
No data available
- Genome Browsers