Gene
cep170aa
- ID
- ZDB-GENE-090312-109
- Name
- centrosomal protein 170Aa
- Symbol
- cep170aa Nomenclature History
- Previous Names
-
- cep170 (1)
- cep170a
- si:ch211-227c6.4
- Type
- protein_coding_gene
- Location
- Chr: 13 Mapping Details/Browsers
- Description
- Predicted to be active in centriole. Orthologous to human CEP170 (centrosomal protein 170).
- Genome Resources
- Note
- None
- Comparative Information
-
- All Expression Data
- No data available
- Cross-Species Comparison
- High Throughput Data
- Thisse Expression Data
- No data available
Wild Type Expression Summary
- All Phenotype Data
- No data available
- Cross-Species Comparison
- Alliance
Phenotype Summary
Mutations
No data available
Human Disease
Domain, Family, and Site Summary
Domain Details Per Protein
| Protein | Additional Resources | Length | Centrosomal and Immune Signaling Modulators | CEP170, C-terminal | Forkhead-associated (FHA) domain | SMAD/FHA domain superfamily |
|---|---|---|---|---|---|---|
| UniProtKB:A0A8M9PBF0 | InterPro | 1479 | ||||
| UniProtKB:A0A8M9PYF0 | InterPro | 1352 | ||||
| UniProtKB:A0A8M3B539 | InterPro | 1482 | ||||
| UniProtKB:A0A8M9QNN4 | InterPro | 1502 | ||||
| UniProtKB:A0A8M9Q177 | InterPro | 1482 |
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| Type | Name | Annotation Method | Has Havana Data | Length (nt) | Analysis |
|---|---|---|---|---|---|
| mRNA |
cep170aa-201
(1)
|
Ensembl | 7,401 nt | ||
| mRNA |
cep170aa-202
(1)
|
Ensembl | 6,847 nt | ||
| mRNA |
cep170aa-204
(1)
|
Ensembl | 285 nt | ||
| ncRNA |
cep170aa-003
(1)
|
Ensembl | 429 nt |
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Interactions and Pathways
No data available
Plasmids
No data available
No data available
| Relationship | Marker Type | Marker | Accession Numbers | Citations |
|---|---|---|---|---|
| Contained in | BAC | CH211-227C6 | ZFIN Curated Data | |
| Contained in | BAC | DKEY-60B15 | ZFIN Curated Data |
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| Type | Accession # | Sequence | Length (nt/aa) | Analysis |
|---|---|---|---|---|
| RNA | RefSeq:XM_068218719 (1) | 6971 nt | ||
| Genomic | GenBank:AL928999 (1) | 169570 nt | ||
| Polypeptide | UniProtKB:A0A8M3AYY4 (1) | 1505 aa |
- Sun, K., Han, Y., Li, J., Yu, S., Huang, Y., Zhang, Y., Reilly, J., Tu, J., Gao, P., Jia, D., Chen, X., Hu, H., Ren, M., Li, P., Luo, J., Ren, X., Zhang, X., Shu, X., Liu, F., Liu, M., Tang, Z. (2023) The splicing factor DHX38 enables retinal development through safeguarding genome integrity. iScience. 26:108103108103
- Tu, J., Yu, S., Li, J., Ren, M., Zhang, Y., Luo, J., Sun, K., Lv, Y., Han, Y., Huang, Y., Ren, X., Jiang, T., Tang, Z., Williams, M.T.S., Lu, Q., Liu, M. (2022) Dhx38 regulates the maintenance and differentiation of erythro-myeloid progenitors and hematopoietic stem cells by alternative splicing. Development (Cambridge, England). 149(17)
- Bayés, À., Collins, M.O., Reig-Viader, R., Gou, G., Goulding, D., Izquierdo, A., Choudhary, J.S., Emes, R.D., Grant, S.G. (2017) Evolution of complexity in the zebrafish synapse proteome. Nature communications. 8:14613
- Elkon, R., Milon, B., Morrison, L., Shah, M., Vijayakumar, S., Racherla, M., Leitch, C.C., Silipino, L., Hadi, S., Weiss-Gayet, M., Barras, E., Schmid, C.D., Ait-Lounis, A., Barnes, A., Song, Y., Eisenman, D.J., Eliyahu, E., Frolenkov, G.I., Strome, S.E., Durand, B., Zaghloul, N.A., Jones, S.M., Reith, W., Hertzano, R. (2015) RFX transcription factors are essential for hearing in mice. Nature communications. 6:8549
- Yin, X., Wang, H., Zhang, Y., Dahlgren, R.A., Zhang, H., Shi, M., Gao, M., Wang, X. (2014) Toxicological Assessment of Trace β-Diketone Antibiotic Mixtures on Zebrafish (Danio rerio) by Proteomic Analysis. PLoS One. 9:e102731
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