Gene

lingo2a

ID
ZDB-GENE-080327-19
Name
leucine rich repeat and Ig domain containing 2a
Symbol
lingo2a Nomenclature History
Previous Names
  • sc:d0348 (1)
Type
protein_coding_gene
Location
Chr: 14 Mapping Details/Browsers
Description
Acts upstream of or within olfactory nerve formation and olfactory placode morphogenesis. Is expressed in basal plate midbrain region and nervous system.
Genome Resources
Note
None
Comparative Information
Expression
All Expression Data
6 figures from Thisse et al., 2008
Cross-Species Comparison
High Throughput Data
Thisse Expression Data
Wild Type Expression Summary
Phenotype
All Phenotype Data
1 Figure from Garaffo et al., 2013
Cross-Species Comparison
Alliance
Phenotype Summary
Mutations
Mutants
Allele Type Localization Consequence Mutagen Supplier
sa6352Allele with one point mutationUnknownPremature StopENU
sa14641Allele with one point mutationUnknownPremature StopENU
European Zebrafish Resource Center (EZRC) (order this)
Zebrafish International Resource Center (ZIRC) (order this)
1 - 2 of 2
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Sequence Targeting Reagents
Targeting Reagent Created Alleles Citations
MO1-lingo2aN/AGaraffo et al., 2013
1 - 1 of 1
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Human Disease
Associated With lingo2a Human Ortholog
No data available
Associated With lingo2a Via Experimental Models
No data available
Gene Ontology
Protein Domains
Domain, Family, and Site Summary
No data available
Domain Details Per Protein
No data available
Transcripts
Genome Browsers
Genome Build: GRCz11Chromosome: 14
Type Name Annotation Method Has Havana Data Length (nt) Analysis
mRNA lingo2a-201 (1)
Ensembl
Ensembl 2,900 nt
ZFIN BLAST
mRNA lingo2a-202 (1)
Ensembl
Ensembl 3,714 nt
ZFIN BLAST
1 - 2 of 2
Interactions and Pathways
No data available
Antibodies
No data available
Plasmids
No data available
Constructs
No data available
Marker Relationships
Relationship Marker Type Marker Accession Numbers Citations
Contained inBACDKEY-229F10ZFIN Curated Data
EncodesESTcssl:d0348Thisse et al., 2008
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Sequences
Type Accession # Sequence Length (nt/aa) Analysis
RNARefSeq:XM_021481255 (1)2994 nt
ZFIN BLASTNCBI BLASTEnsemblUCSC BLAT
GenomicGenBank:CR786577 (1)149499 nt
MegaBLASTEnsembl
PolypeptideRefSeq:XP_021336930 (1)
ZFIN BLASTNCBI BLASTUCSC BLATEnsembl Protein Blast
Orthology
Comparative Orthology
Alliance
Gene Tree
Ensembl
Species Symbol Chromosome Accession # Evidence
HumanLINGO29
Amino acid sequence comparison (1)
MouseLingo24
Amino acid sequence comparison (1)
Citations
TSV
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