Gene
si:ch211-66e2.3
- ID
- ZDB-GENE-080226-7
- Name
- si:ch211-66e2.3
- Symbol
- si:ch211-66e2.3 Nomenclature History
- Previous Names
-
- sc:d0139 (1)
- Type
- protein_coding_gene
- Location
- Chr: 3 Mapping Details/Browsers
- Description
- Predicted to enable integrin binding activity. Predicted to act upstream of or within cell-cell adhesion. Predicted to be located in membrane. Orthologous to human ICAM2 (intercellular adhesion molecule 2).
- Genome Resources
- Note
- None
- Comparative Information
-
- All Expression Data
- 1 figure from Thisse et al., 2008
- Cross-Species Comparison
- High Throughput Data
- Thisse Expression Data
-
- cssl:d139 (1 image)
Wild Type Expression Summary
- All Phenotype Data
- No data available
- Cross-Species Comparison
- Alliance
Phenotype Summary
Mutations
No data available
Human Disease
Domain, Family, and Site Summary
Type | InterPro ID | Name |
---|---|---|
Domain | IPR003987 | Intercellular adhesion molecule/vascular cell adhesion molecule, N-terminal |
Domain | IPR007110 | Immunoglobulin-like domain |
Domain | IPR013768 | Intercellular adhesion molecule, N-terminal |
Family | IPR047012 | Intercellular adhesion molecule/vascular cell adhesion molecule |
Homologous_superfamily | IPR013783 | Immunoglobulin-like fold |
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Domain Details Per Protein
Protein | Additional Resources | Length | Immunoglobulin-like domain | Immunoglobulin-like domain superfamily | Immunoglobulin-like fold | Intercellular adhesion molecule, N-terminal | Intercellular adhesion molecule/vascular cell adhesion molecule | Intercellular adhesion molecule/vascular cell adhesion molecule, N-terminal |
---|---|---|---|---|---|---|---|---|
UniProtKB:A4JYI9 | InterPro | 315 |
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Type | Name | Annotation Method | Has Havana Data | Length (nt) | Analysis |
---|---|---|---|---|---|
mRNA |
si:ch211-66e2.3-201
(1)
|
Ensembl | 1,232 nt | ||
mRNA |
si:ch211-66e2.3-202
(1)
|
Ensembl | 3,267 nt |
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Interactions and Pathways
No data available
Plasmids
No data available
No data available
Relationship | Marker Type | Marker | Accession Numbers | Citations |
---|---|---|---|---|
Contained in | BAC | CH211-66E2 | ZFIN Curated Data | |
Encodes | cDNA | cssl:d139 | Bushell et al., 2007 |
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Type | Accession # | Sequence | Length (nt/aa) | Analysis |
---|---|---|---|---|
RNA | RefSeq:NM_001115104 (1) | 1226 nt | ||
Genomic | GenBank:CR354432 (2) | 193960 nt | ||
Polypeptide | UniProtKB:A4JYI9 (1) | 315 aa |
No data available
- Bayés, À., Collins, M.O., Reig-Viader, R., Gou, G., Goulding, D., Izquierdo, A., Choudhary, J.S., Emes, R.D., Grant, S.G. (2017) Evolution of complexity in the zebrafish synapse proteome. Nature communications. 8:14613
- Liu, C., Wu, C., Yang, Q., Gao, J., Li, L., Yang, D., Luo, L. (2016) Macrophages Mediate the Repair of Brain Vascular Rupture through Direct Physical Adhesion and Mechanical Traction. Immunity. 44(5):1162-76
- Elkon, R., Milon, B., Morrison, L., Shah, M., Vijayakumar, S., Racherla, M., Leitch, C.C., Silipino, L., Hadi, S., Weiss-Gayet, M., Barras, E., Schmid, C.D., Ait-Lounis, A., Barnes, A., Song, Y., Eisenman, D.J., Eliyahu, E., Frolenkov, G.I., Strome, S.E., Durand, B., Zaghloul, N.A., Jones, S.M., Reith, W., Hertzano, R. (2015) RFX transcription factors are essential for hearing in mice. Nature communications. 6:8549
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