Gene

arid1aa

ID
ZDB-GENE-080220-35
Name
AT rich interactive domain 1Aa (SWI-like)
Symbol
arid1aa Nomenclature History
Previous Names
  • fb79b07
  • fb95g08
  • wu:fb79b07
  • wu:fb95g08
  • zgc:171438
Type
protein_coding_gene
Location
Chr: 16 Mapping Details/Browsers
Description
Predicted to contribute to nucleosome binding activity. Predicted to be involved in ATP-dependent chromatin remodeling; positive regulation of transcription, DNA-templated; and regulation of transcription by RNA polymerase II. Predicted to localize to SWI/SNF complex; nBAF complex; and nucleoplasm. Human ortholog(s) of this gene implicated in Coffin-Siris syndrome 2 and neuroblastoma. Is expressed in hindbrain and neurons. Orthologous to human ARID1A (AT-rich interaction domain 1A).
Genome Resources
Note
None
Comparative Information
Expression
All Expression Data
4 figures from Thisse et al., 2004
Cross-Species Comparison
High Throughput Data
Thisse Expression Data
Wild Type Expression Summary
Phenotype
All Phenotype Data
No data available
Cross-Species Comparison
Alliance
Phenotype Summary
Mutations
Mutants
Sequence Targeting Reagents
Human Disease
Associated With arid1aa Human Ortholog
Disease Ontology Term Multi-Species Data OMIM Term OMIM Phenotype ID
Coffin-Siris syndrome 2 Alliance Coffin-Siris syndrome 2 614607
Associated With arid1aa Via Experimental Models
No data available
Gene Ontology
Protein Domains
Domain, Family, and Site Summary
Type InterPro ID Name
Domain IPR001304 C-type lectin-like
Domain IPR001606 ARID DNA-binding domain
Domain IPR033388 SWI/SNF-like complex subunit BAF250, C-terminal
Family IPR021906 SWI/SNF-like complex subunit BAF250/Osa
Family IPR030094 SWI/SNF-like complex subunit BAF250a
Homologous_superfamily IPR016186 C-type lectin-like/link domain superfamily
Homologous_superfamily IPR016187 C-type lectin fold
Homologous_superfamily IPR036431 ARID DNA-binding domain superfamily
Domain Details Per Protein
Protein Length ARID DNA-binding domain ARID DNA-binding domain superfamily C-type lectin fold C-type lectin-like C-type lectin-like/link domain superfamily SWI/SNF-like complex subunit BAF250a SWI/SNF-like complex subunit BAF250, C-terminal SWI/SNF-like complex subunit BAF250/Osa
UniProtKB:B0BLV4 129
UniProtKB:A0A0R4IVD0 2285
UniProtKB:A0A0R4IKJ3 2286
Transcripts
Genome Browsers
Interactions and Pathways
No data available
Antibodies
No data available
Plasmids
No data available
Constructs
Marker Relationships
Sequences
Orthology
Comparative Orthology
Alliance
Gene Tree
Ensembl
Citations