ZFIN is now using GRCz12tu for Genomic Data
Gene
si:ch211-125e6.5
- ID
- ZDB-GENE-070912-39
- Name
- si:ch211-125e6.5
- Symbol
- si:ch211-125e6.5 Nomenclature History
- Previous Names
- None
- Type
- protein_coding_gene
- Location
- Chr: 9 Mapping Details/Browsers
- Genome Assembly
- GRCz11
- Annotation Status
- Not in current annotation release
- Description
- Predicted to enable signaling receptor activity. Human ortholog(s) of this gene implicated in type 1 diabetes mellitus. Orthologous to several human genes including REG4 (regenerating family member 4).
- Genome Resources
- Note
- None
- Comparative Information
-
- All Expression Data
- 1 figure from Scheldeman et al., 2017
- Cross-Species Comparison
- High Throughput Data
- Thisse Expression Data
- No data available
Wild Type Expression Summary
- All Phenotype Data
- No data available
- Cross-Species Comparison
- Alliance
Phenotype Summary
Mutations
No data available
No data available
Human Disease
Domain, Family, and Site Summary
| Type | InterPro ID | Name |
|---|---|---|
| Conserved_site | IPR018378 | C-type lectin, conserved site |
| Domain | IPR001304 | C-type lectin-like |
| Family | IPR002353 | Type-2 ice-structuring protein |
| Family | IPR050111 | C-type lectin and snaclec domain-containing protein |
| Homologous_superfamily | IPR016186 | C-type lectin-like/link domain superfamily |
1 - 5 of 6 Show all
Domain Details Per Protein
| Protein | Additional Resources | Length | C-type lectin and snaclec domain-containing protein | C-type lectin, conserved site | C-type lectin fold | C-type lectin-like | C-type lectin-like/link domain superfamily | Type-2 ice-structuring protein |
|---|---|---|---|---|---|---|---|---|
| UniProtKB:E7FAQ3 | InterPro | 151 |
1 - 1 of 1
| Type | Name | Annotation Method | Has Havana Data | Length (nt) | Analysis |
|---|---|---|---|---|---|
| mRNA |
si:ch211-125e6.5-201
(1)
|
Ensembl | 690 nt | ||
| mRNA |
si:ch211-125e6.5-202
(1)
|
Ensembl | 630 nt |
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Interactions and Pathways
No data available
Plasmids
No data available
No data available
| Relationship | Marker Type | Marker | Accession Numbers | Citations |
|---|---|---|---|---|
| Contained in | BAC | CH211-125E6 | ZFIN Curated Data |
1 - 1 of 1
Show
No data available
| Type | Accession # | Genome Assembly | Length (nt/aa) | Analysis |
|---|---|---|---|---|
| RNA | RefSeq:XM_001337565 (1) | GRCz11 | ||
| Genomic | GenBank:BX511259 | 182412 nt | ||
| Polypeptide | UniProtKB:E7FAQ3 (1) | 151 aa |
No data available